Olivier Borkowski
@oborkowski.bsky.social
Tenured Scientist in Synthetic Biology
(INRAE, Paris Area, France)
#CellFree ⦁ #SynBio ⦁ #Bioengineering ⦁ #Microbiology
https://sites.google.com/view/olivierborkowski
(INRAE, Paris Area, France)
#CellFree ⦁ #SynBio ⦁ #Bioengineering ⦁ #Microbiology
https://sites.google.com/view/olivierborkowski
The role of active mRNA–ribosome dynamics and closing constriction in daughter chromosome separation in Escherichia coli
doi.org/10.1073/pnas...
doi.org/10.1073/pnas...
November 14, 2025 at 9:20 AM
The role of active mRNA–ribosome dynamics and closing constriction in daughter chromosome separation in Escherichia coli
doi.org/10.1073/pnas...
doi.org/10.1073/pnas...
Broad-Host-Range Synthetic Biology: Rethinking Microbial Chassis as a Design Variable
pubs.acs.org/doi/10.1021/...
pubs.acs.org/doi/10.1021/...
November 13, 2025 at 8:52 AM
Broad-Host-Range Synthetic Biology: Rethinking Microbial Chassis as a Design Variable
pubs.acs.org/doi/10.1021/...
pubs.acs.org/doi/10.1021/...
Beyond the niche - unlocking the full potential of synthetic riboswitches
doi.org/10.1038/s414...
doi.org/10.1038/s414...
November 13, 2025 at 5:44 AM
Beyond the niche - unlocking the full potential of synthetic riboswitches
doi.org/10.1038/s414...
doi.org/10.1038/s414...
Harnessing Plasmid Crosstalk in Transcription Factor Mediated Cell-Free Biosensors
doi.org/10.1101/2025...
doi.org/10.1101/2025...
November 12, 2025 at 5:14 PM
Harnessing Plasmid Crosstalk in Transcription Factor Mediated Cell-Free Biosensors
doi.org/10.1101/2025...
doi.org/10.1101/2025...
Negative design enables cell-free expression and folding of designed transmembrane β-Barrels
doi.org/10.1101/2025...
doi.org/10.1101/2025...
November 6, 2025 at 9:59 PM
Negative design enables cell-free expression and folding of designed transmembrane β-Barrels
doi.org/10.1101/2025...
doi.org/10.1101/2025...
Modeling and minimization of dCas9-induced competition in CRISPRi-based genetic circuits
doi.org/10.1101/2025...
doi.org/10.1101/2025...
November 6, 2025 at 5:14 PM
Modeling and minimization of dCas9-induced competition in CRISPRi-based genetic circuits
doi.org/10.1101/2025...
doi.org/10.1101/2025...
Engineered orthogonal translation systems from metagenomic libraries expand the genetic code
doi.org/10.1101/2025...
doi.org/10.1101/2025...
October 31, 2025 at 9:18 AM
Engineered orthogonal translation systems from metagenomic libraries expand the genetic code
doi.org/10.1101/2025...
doi.org/10.1101/2025...
Synthetic Cells By The Numbers
doi.org/10.1016/j.is...
doi.org/10.1016/j.is...
October 31, 2025 at 8:25 AM
Synthetic Cells By The Numbers
doi.org/10.1016/j.is...
doi.org/10.1016/j.is...
SB 8.0 is starting !!!
October 30, 2025 at 8:36 AM
SB 8.0 is starting !!!
Emergence of population-level feedback control by transposon-plasmid coevolution
doi.org/10.1101/2025...
doi.org/10.1101/2025...
October 21, 2025 at 7:03 AM
Emergence of population-level feedback control by transposon-plasmid coevolution
doi.org/10.1101/2025...
doi.org/10.1101/2025...
Global constraint principle for microbial growth laws
doi.org/10.1073/pnas...
doi.org/10.1073/pnas...
October 13, 2025 at 10:55 AM
Global constraint principle for microbial growth laws
doi.org/10.1073/pnas...
doi.org/10.1073/pnas...
Sequence-free landscape inference for directed evolution
doi.org/10.1101/2025...
doi.org/10.1101/2025...
October 10, 2025 at 7:05 AM
Sequence-free landscape inference for directed evolution
doi.org/10.1101/2025...
doi.org/10.1101/2025...
Mycoelectronics: Bioprinted Living Fungal Bioelectronics for Artificial Sensation
doi.org/10.1101/2025...
doi.org/10.1101/2025...
October 8, 2025 at 6:54 AM
Mycoelectronics: Bioprinted Living Fungal Bioelectronics for Artificial Sensation
doi.org/10.1101/2025...
doi.org/10.1101/2025...
Strategies for engineering domesticated and undomesticated human microbes
doi.org/10.1016/j.co...
doi.org/10.1016/j.co...
October 7, 2025 at 7:42 AM
Strategies for engineering domesticated and undomesticated human microbes
doi.org/10.1016/j.co...
doi.org/10.1016/j.co...
SHARK: a specialized host for assembling R6K plasmids
doi.org/10.1101/2025...
doi.org/10.1101/2025...
October 7, 2025 at 7:02 AM
SHARK: a specialized host for assembling R6K plasmids
doi.org/10.1101/2025...
doi.org/10.1101/2025...
Microbial stem cells support productivity in dedicated factory cells in an asymmetrically dividing E. coli system
doi.org/10.1101/2025...
doi.org/10.1101/2025...
October 6, 2025 at 7:03 AM
Microbial stem cells support productivity in dedicated factory cells in an asymmetrically dividing E. coli system
doi.org/10.1101/2025...
doi.org/10.1101/2025...
Cell-free opens a unique test-bed to reconstituteand to explore alternative life possibilities.
Check our review (by Maud Hofmann, Farouk Abdo, @manishmicrobe and myself) :
Reconstituting alternative life using the test-bed of cell-free systems
doi.org/10.1098/rstb...
Check our review (by Maud Hofmann, Farouk Abdo, @manishmicrobe and myself) :
Reconstituting alternative life using the test-bed of cell-free systems
doi.org/10.1098/rstb...
October 2, 2025 at 10:58 AM
Cell-free opens a unique test-bed to reconstituteand to explore alternative life possibilities.
Check our review (by Maud Hofmann, Farouk Abdo, @manishmicrobe and myself) :
Reconstituting alternative life using the test-bed of cell-free systems
doi.org/10.1098/rstb...
Check our review (by Maud Hofmann, Farouk Abdo, @manishmicrobe and myself) :
Reconstituting alternative life using the test-bed of cell-free systems
doi.org/10.1098/rstb...
Cell-free systems enable mechanistic characterization of genetically encoded RNA strand exchange circuits for programmable protein expression
doi.org/10.1101/2025...
doi.org/10.1101/2025...
October 1, 2025 at 12:56 PM
Cell-free systems enable mechanistic characterization of genetically encoded RNA strand exchange circuits for programmable protein expression
doi.org/10.1101/2025...
doi.org/10.1101/2025...
A tool for modeling gene regulatory networks (GRN_modeler) and its applications to synthetic biology
doi.org/10.1038/s443...
doi.org/10.1038/s443...
September 30, 2025 at 5:56 PM
A tool for modeling gene regulatory networks (GRN_modeler) and its applications to synthetic biology
doi.org/10.1038/s443...
doi.org/10.1038/s443...
A Decade of SBOL Visual: Growing Adoption of a Diagram Standard for Engineering Biology
pubs.acs.org/doi/10.1021/...
pubs.acs.org/doi/10.1021/...
September 30, 2025 at 9:37 AM
A Decade of SBOL Visual: Growing Adoption of a Diagram Standard for Engineering Biology
pubs.acs.org/doi/10.1021/...
pubs.acs.org/doi/10.1021/...
Black-box optimization in immunology and beyond: A practical guide to algorithms and future directions
doi.org/10.1016/j.al...
doi.org/10.1016/j.al...
September 29, 2025 at 3:26 PM
Black-box optimization in immunology and beyond: A practical guide to algorithms and future directions
doi.org/10.1016/j.al...
doi.org/10.1016/j.al...
Modular Machine Learning with Applications to Genetic Circuit Composition
doi.org/10.48550/arX...
doi.org/10.48550/arX...
September 28, 2025 at 3:01 PM
Modular Machine Learning with Applications to Genetic Circuit Composition
doi.org/10.48550/arX...
doi.org/10.48550/arX...
Cell-free recombinase-integrated Boolean output system
doi.org/10.1016/j.ce...
doi.org/10.1016/j.ce...
September 27, 2025 at 6:05 AM
Cell-free recombinase-integrated Boolean output system
doi.org/10.1016/j.ce...
doi.org/10.1016/j.ce...
Closed-loop Optogenetic Control in a Microplate Reader
doi.org/10.1101/2025...
doi.org/10.1101/2025...
September 23, 2025 at 8:40 AM
Closed-loop Optogenetic Control in a Microplate Reader
doi.org/10.1101/2025...
doi.org/10.1101/2025...
An AI-driven Workflow for Accelerated Optimization of Cell-Free Protein Synthesis
doi.org/10.1016/j.is...
doi.org/10.1016/j.is...
September 22, 2025 at 8:13 AM
An AI-driven Workflow for Accelerated Optimization of Cell-Free Protein Synthesis
doi.org/10.1016/j.is...
doi.org/10.1016/j.is...