Reposted by napari
It's been great to present OME-Zarrs & Fractal for interoperable bioimage analysis at the 2025 @cytodata.bsky.social conference in Berlin today. Thanks a lot to the organizers & especially Christopher Schmied for having us!
November 20, 2025 at 1:03 PM
It's been great to present OME-Zarrs & Fractal for interoperable bioimage analysis at the 2025 @cytodata.bsky.social conference in Berlin today. Thanks a lot to the organizers & especially Christopher Schmied for having us!
Reposted by napari
Last-minute advert for the Convpaint workshop at I2K by Roman Schwob! Interactive segmentation in @napari.org. Today 2:00 PM CET. Free registration:
www.i2kconference.org/workshops
www.i2kconference.org/workshops
November 18, 2025 at 12:13 PM
Last-minute advert for the Convpaint workshop at I2K by Roman Schwob! Interactive segmentation in @napari.org. Today 2:00 PM CET. Free registration:
www.i2kconference.org/workshops
www.i2kconference.org/workshops
Reposted by napari
Remember that survey about how we can sustain napari development? We extended the deadline until the 16th, AoE! Blog post: napari.org/island-dispa...
Survey: napari.typeform.com/sustainability
If you use napari at all we would be super grateful if you filled it in! 🙏
Survey: napari.typeform.com/sustainability
If you use napari at all we would be super grateful if you filled it in! 🙏
You might have noticed lots of activity in the napari project recently! 🚀 We're grateful for a grant from CZI that's keeping us going, but grants don't last forever: we're trying to figure out sustainable long term funding. Read our blog post to find out how you can help:
napari.org/island-dispa...
napari.org/island-dispa...
November 10, 2025 at 1:23 PM
Remember that survey about how we can sustain napari development? We extended the deadline until the 16th, AoE! Blog post: napari.org/island-dispa...
Survey: napari.typeform.com/sustainability
If you use napari at all we would be super grateful if you filled it in! 🙏
Survey: napari.typeform.com/sustainability
If you use napari at all we would be super grateful if you filled it in! 🙏
Remember that survey about how we can sustain napari development? We extended the deadline until the 16th, AoE! Blog post: napari.org/island-dispa...
Survey: napari.typeform.com/sustainability
If you use napari at all we would be super grateful if you filled it in! 🙏
Survey: napari.typeform.com/sustainability
If you use napari at all we would be super grateful if you filled it in! 🙏
You might have noticed lots of activity in the napari project recently! 🚀 We're grateful for a grant from CZI that's keeping us going, but grants don't last forever: we're trying to figure out sustainable long term funding. Read our blog post to find out how you can help:
napari.org/island-dispa...
napari.org/island-dispa...
November 10, 2025 at 1:23 PM
Remember that survey about how we can sustain napari development? We extended the deadline until the 16th, AoE! Blog post: napari.org/island-dispa...
Survey: napari.typeform.com/sustainability
If you use napari at all we would be super grateful if you filled it in! 🙏
Survey: napari.typeform.com/sustainability
If you use napari at all we would be super grateful if you filled it in! 🙏
Reposted by napari
Hi Fans of Feedback Microscopy,
what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
November 7, 2025 at 7:23 PM
Hi Fans of Feedback Microscopy,
what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
what would you do when you have access to the pixel stream from @zeiss-microscopy.bsky.social inside @napari.org?
Btw, it works as well in Fiji&ImageJ :-)
Sidenote: Experiments started from "outside" do not update the ZEN UI. But they are executed by ZENservice.
Reposted by napari
I'd only dabbled with napari, but needed to use it for a paper we're writing. This is a quick post about getting started: from installation to a folder full of thousands of processed images, with gotchas along the way.
quantixed.org/2025/11/04/a...
quantixed.org/2025/11/04/a...
Adventures in Code VII: getting started with napari – quantixed
quantixed.org
November 4, 2025 at 10:00 AM
I'd only dabbled with napari, but needed to use it for a paper we're writing. This is a quick post about getting started: from installation to a folder full of thousands of processed images, with gotchas along the way.
quantixed.org/2025/11/04/a...
quantixed.org/2025/11/04/a...
Reposted by napari
Save the date! The Open Software Summer School returns August 17-28 2026 in London, U.K.
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
October 31, 2025 at 3:25 PM
Save the date! The Open Software Summer School returns August 17-28 2026 in London, U.K.
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
There will be four separate tracks on animal behaviour, extracellular electrophysiology, anatomy and handling large data.
Applications open Dec 1st.
More details:
neuroinformatics.dev/open-softwar...
Happy Halloween from the napari team!
October 31, 2025 at 2:20 PM
Happy Halloween from the napari team!
Reposted by napari
It was a fantastic opportunity to finally meet the people behind this software that I have been using for years and is so important for my work! A big thank you to all core developers who were so welcoming, and patiently guided participants in their attempts to contribute back to napari!
Longer wrap-up to come, but in the meantime: we had a fantastic and productive time at the napari hackathon at @globias.bsky.social 2025 conference! Thanks to all the participants and to the GloBIAS team for hosting us!
October 30, 2025 at 4:14 PM
It was a fantastic opportunity to finally meet the people behind this software that I have been using for years and is so important for my work! A big thank you to all core developers who were so welcoming, and patiently guided participants in their attempts to contribute back to napari!
Reposted by napari
I truly appreciate the organizers, core contributors, and all attendees for this wonderful opportunity! I enjoyed learning and working on napari in a welcoming environment.
Those interested in talking about and contributing to napari, let’s join the regular community meeting together!
Those interested in talking about and contributing to napari, let’s join the regular community meeting together!
October 31, 2025 at 3:16 AM
I truly appreciate the organizers, core contributors, and all attendees for this wonderful opportunity! I enjoyed learning and working on napari in a welcoming environment.
Those interested in talking about and contributing to napari, let’s join the regular community meeting together!
Those interested in talking about and contributing to napari, let’s join the regular community meeting together!
Longer wrap-up to come, but in the meantime: we had a fantastic and productive time at the napari hackathon at @globias.bsky.social 2025 conference! Thanks to all the participants and to the GloBIAS team for hosting us!
October 30, 2025 at 6:53 AM
Longer wrap-up to come, but in the meantime: we had a fantastic and productive time at the napari hackathon at @globias.bsky.social 2025 conference! Thanks to all the participants and to the GloBIAS team for hosting us!
Do you use napari and love @xarray.bsky.social? Or use Xarray but cry when napari ignores the axis names? Read how we will improve this in the future! 🤝
napari.org/island-dispa...
Co-authored by @ianhi.bsky.social and @timmonko.bsky.social, powered by the @scipyconf.bsky.social sprints!
napari.org/island-dispa...
Co-authored by @ianhi.bsky.social and @timmonko.bsky.social, powered by the @scipyconf.bsky.social sprints!
Xarray ❤️ napari — napari blog documentation
napari.org
October 24, 2025 at 3:34 PM
Do you use napari and love @xarray.bsky.social? Or use Xarray but cry when napari ignores the axis names? Read how we will improve this in the future! 🤝
napari.org/island-dispa...
Co-authored by @ianhi.bsky.social and @timmonko.bsky.social, powered by the @scipyconf.bsky.social sprints!
napari.org/island-dispa...
Co-authored by @ianhi.bsky.social and @timmonko.bsky.social, powered by the @scipyconf.bsky.social sprints!
Reposted by napari
Filling out the attached survey and reading this blog will really help bring you up to speed with our progress as a team. Most importantly, we want to guide this project in the direction that sustainably supports the community -- and that's why we'd like your help!
You might have noticed lots of activity in the napari project recently! 🚀 We're grateful for a grant from CZI that's keeping us going, but grants don't last forever: we're trying to figure out sustainable long term funding. Read our blog post to find out how you can help:
napari.org/island-dispa...
napari.org/island-dispa...
October 21, 2025 at 4:40 PM
Filling out the attached survey and reading this blog will really help bring you up to speed with our progress as a team. Most importantly, we want to guide this project in the direction that sustainably supports the community -- and that's why we'd like your help!
You might have noticed lots of activity in the napari project recently! 🚀 We're grateful for a grant from CZI that's keeping us going, but grants don't last forever: we're trying to figure out sustainable long term funding. Read our blog post to find out how you can help:
napari.org/island-dispa...
napari.org/island-dispa...
October 21, 2025 at 2:32 PM
You might have noticed lots of activity in the napari project recently! 🚀 We're grateful for a grant from CZI that's keeping us going, but grants don't last forever: we're trying to figure out sustainable long term funding. Read our blog post to find out how you can help:
napari.org/island-dispa...
napari.org/island-dispa...
Reposted by napari
The #OME-Zarr RFC-5 proposal allows you to transform multiple images into the same coordinateSystem. Trying this out with napari at github.com/will-moore/n.... Cool that you can offset T-dimension as well as XYZ!
October 20, 2025 at 1:00 PM
The #OME-Zarr RFC-5 proposal allows you to transform multiple images into the same coordinateSystem. Trying this out with napari at github.com/will-moore/n.... Cool that you can offset T-dimension as well as XYZ!
napari 0.6.6 is out! 🚀
This is a bugfix release following up 0.6.5: if something in your napari workflow unexplicably broke, you might want to update ;) Also, with the new bundle you can now "open files with > napari"! Check out the full release notes on the website: napari.org/stable/relea...
This is a bugfix release following up 0.6.5: if something in your napari workflow unexplicably broke, you might want to update ;) Also, with the new bundle you can now "open files with > napari"! Check out the full release notes on the website: napari.org/stable/relea...
napari: a fast, interactive viewer for multi-dimensional images in Python
view and explore 2D, 3D, and higher-dimensional arrays on a canvas;, overlay derived data such as points, polygons, segmentations, and more;, annotate and edit derived datasets, using standard data st...
napari.org
October 16, 2025 at 12:21 PM
napari 0.6.6 is out! 🚀
This is a bugfix release following up 0.6.5: if something in your napari workflow unexplicably broke, you might want to update ;) Also, with the new bundle you can now "open files with > napari"! Check out the full release notes on the website: napari.org/stable/relea...
This is a bugfix release following up 0.6.5: if something in your napari workflow unexplicably broke, you might want to update ;) Also, with the new bundle you can now "open files with > napari"! Check out the full release notes on the website: napari.org/stable/relea...
Reposted by napari
We are incredibly proud to receieve this award, especially as it recognises the hard work of the entire BrainGlobe community.
Thank you to everyone who has contributed to BrainGlobe over the years!
Thank you to everyone who has contributed to BrainGlobe over the years!
🏆Announcing the laureates of the Neuro - Irv and Helga Cooper Foundation Open Science Prizes 2025!
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
🎉 Join us in celebrating the laureates at the award ceremony, featuring a special lecture from International Prize laureate representative from the BrainGlobe initiative.
#OpenScience #Neuroscience
The Neuro – Irv and Helga Cooper Foundation Open Science Prizes: Meet the winners of an exceptional edition
This year’s edition of the Irv and Helga Cooper Foundation Open Science Prizes at The Neuro, organised by the Tanenbaum Open Science Institute, was exceptional in every way. With a record number of ap...
www.mcgill.ca
October 9, 2025 at 7:06 AM
We are incredibly proud to receieve this award, especially as it recognises the hard work of the entire BrainGlobe community.
Thank you to everyone who has contributed to BrainGlobe over the years!
Thank you to everyone who has contributed to BrainGlobe over the years!
Join the new plugin sustainability initiative!
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Meeting schedule
We hold regular meetings, the timings of which are available on our public calendar. If you are using napari or interested in how napari could be used in your work, please join one of our regular comm...
napari.org
October 6, 2025 at 3:57 AM
Join the new plugin sustainability initiative!
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
Everyone is invited to fill out this interest form: forms.gle/iwX6P4tuooHK...
Follow along with initial discussion on Zulip: napari.zulipchat.com#narrow/chann...
The first zoom meeting will be this coming week: napari.org/stable/commu...
napari 0.6.5 is out! 🚀
Rapid-fire highlights are: colorbar overlay, custom startup script, and better and prettier documentation! Check out the full release notes here: napari.org/dev/release/...
Rapid-fire highlights are: colorbar overlay, custom startup script, and better and prettier documentation! Check out the full release notes here: napari.org/dev/release/...
October 2, 2025 at 11:44 AM
napari 0.6.5 is out! 🚀
Rapid-fire highlights are: colorbar overlay, custom startup script, and better and prettier documentation! Check out the full release notes here: napari.org/dev/release/...
Rapid-fire highlights are: colorbar overlay, custom startup script, and better and prettier documentation! Check out the full release notes here: napari.org/dev/release/...
Check out the cool new “release highlights history” page @timmonko.bsky.social cooked up for us! 😍
napari.org/stable/relea...
Best of all: it’s automatically generated from release notes so it’ll always stay up to date.
napari.org/stable/relea...
Best of all: it’s automatically generated from release notes so it’ll always stay up to date.
Release Notes
Each section shows the highlights from recent releases. Click on the version links to view the complete release notes. Last updated: September 17, 2025 Recent Releases (Last 3 Months): Latest features...
napari.org
September 20, 2025 at 1:26 PM
Check out the cool new “release highlights history” page @timmonko.bsky.social cooked up for us! 😍
napari.org/stable/relea...
Best of all: it’s automatically generated from release notes so it’ll always stay up to date.
napari.org/stable/relea...
Best of all: it’s automatically generated from release notes so it’ll always stay up to date.
Reposted by napari
the @napari.org crew came to town! 🥰
September 20, 2025 at 12:23 AM
the @napari.org crew came to town! 🥰
Reposted by napari
Jumping 🕴️ now into "Practical session 4: Behavior Modeling" with @kevinyamauchi.bsky.social online! First things first, students are getting to know how to do #bioimage visualization in Python 🖥️🐍 using @napari.org👇
September 16, 2025 at 12:52 PM
Jumping 🕴️ now into "Practical session 4: Behavior Modeling" with @kevinyamauchi.bsky.social online! First things first, students are getting to know how to do #bioimage visualization in Python 🖥️🐍 using @napari.org👇
Reposted by napari
Lovely talk by Open Software Week participant @ishratz25.bsky.social on the challenges of using @brainglobe.info tools to identify very small regions, in very large images.
Check out the PyCon Au talk from my team member: @ishratz25.bsky.social on the challenges and solutions(?) of cell counting in whole-brain light sheet images! Also give her a follow, she's new here.
www.youtube.com/watch?v=ccLn...
www.youtube.com/watch?v=ccLn...
"Big Brains, Small Targets: Whole-Brain Image Analysis with Python" - Ishrat Zaman (PyCon AU 2025)
YouTube video by PyCon AU
www.youtube.com
September 17, 2025 at 9:00 AM
Lovely talk by Open Software Week participant @ishratz25.bsky.social on the challenges of using @brainglobe.info tools to identify very small regions, in very large images.
Reposted by napari
Thrilled to share the first story from my postdoc! 🎉 A wonderful experiment + simulations collaboration. In the Drosophila wing, we find that 3D cell shapes affect signalling range and fine-tune developmental patterning www.biorxiv.org/content/10.1... Thread below ⬇️
August 11, 2025 at 1:18 PM
Thrilled to share the first story from my postdoc! 🎉 A wonderful experiment + simulations collaboration. In the Drosophila wing, we find that 3D cell shapes affect signalling range and fine-tune developmental patterning www.biorxiv.org/content/10.1... Thread below ⬇️
Reposted by napari
In our next guest blog, GSoC participant Saarah Hussain talks about her summer working on @brainglobe.info.
neuroinformatics.dev/blog/gsoc_20...
neuroinformatics.dev/blog/gsoc_20...
September 15, 2025 at 1:36 PM
In our next guest blog, GSoC participant Saarah Hussain talks about her summer working on @brainglobe.info.
neuroinformatics.dev/blog/gsoc_20...
neuroinformatics.dev/blog/gsoc_20...