Zoe Anne Dyson
@msmicrobiocode.bsky.social
Assistant Professor @LSHTM. Co-Deputy Director of the LSHTM DASH Centre. Co-coordinator of the Global Typhoid Genomics Consortium. Editor at mSystems. Bacterial pathogen genomics, genetic epidemiology, transmission dynamics, and AMR. Views mine. She/her
Pinned
2026-27 Project (Dyson & Mostowy & Knight) - MRC London Intercollegiate Doctoral Training Partnership Studentships
PHACTS: Unravelling PHAge-baCTeria-host immune dynamicS to inform phage therapy SUPERVISORY TEAM Supervisor Dr Zoe Dyson...
mrc-lid.lshtm.ac.uk
London interdisciplinary #PhD position now open with myself, @sergemostowylab.bsky.social, & @gmknght.bsky.social on #phage -bacteria-host immune dynamics for WHO priority bacterial pathogens #Klebsiella, #Shigella, and #Staph. Combines cellular microbiology, genomics, & mathematical modelling.
London interdisciplinary #PhD position now open with myself, @sergemostowylab.bsky.social, & @gmknght.bsky.social on #phage -bacteria-host immune dynamics for WHO priority bacterial pathogens #Klebsiella, #Shigella, and #Staph. Combines cellular microbiology, genomics, & mathematical modelling.
2026-27 Project (Dyson & Mostowy & Knight) - MRC London Intercollegiate Doctoral Training Partnership Studentships
PHACTS: Unravelling PHAge-baCTeria-host immune dynamicS to inform phage therapy SUPERVISORY TEAM Supervisor Dr Zoe Dyson...
mrc-lid.lshtm.ac.uk
November 13, 2025 at 11:11 AM
London interdisciplinary #PhD position now open with myself, @sergemostowylab.bsky.social, & @gmknght.bsky.social on #phage -bacteria-host immune dynamics for WHO priority bacterial pathogens #Klebsiella, #Shigella, and #Staph. Combines cellular microbiology, genomics, & mathematical modelling.
Reposted by Zoe Anne Dyson
PhD position (London, UK)
Generating microbiology data and paired mathematical modelling
with @msmicrobiocode.bsky.social @gmknght.bsky.social @sergemostowylab.bsky.social
at @lshtm.bsky.social
More details: http://iddjobs.org/jobs/2405
Generating microbiology data and paired mathematical modelling
with @msmicrobiocode.bsky.social @gmknght.bsky.social @sergemostowylab.bsky.social
at @lshtm.bsky.social
More details: http://iddjobs.org/jobs/2405
November 11, 2025 at 11:58 PM
PhD position (London, UK)
Generating microbiology data and paired mathematical modelling
with @msmicrobiocode.bsky.social @gmknght.bsky.social @sergemostowylab.bsky.social
at @lshtm.bsky.social
More details: http://iddjobs.org/jobs/2405
Generating microbiology data and paired mathematical modelling
with @msmicrobiocode.bsky.social @gmknght.bsky.social @sergemostowylab.bsky.social
at @lshtm.bsky.social
More details: http://iddjobs.org/jobs/2405
Reposted by Zoe Anne Dyson
🚨 New paper out on @narjournal.bsky.social.
Many thanks to everyone involved, especially the project leader Professor @katholt.bsky.social and the wonderful #AMRnet team: @msmicrobiocode.bsky.social, Vandana Sharma, Mary Maranga, Ebenezer Foster-Nyarko, Megan Carey
academic.oup.com/nar/advance-...
Many thanks to everyone involved, especially the project leader Professor @katholt.bsky.social and the wonderful #AMRnet team: @msmicrobiocode.bsky.social, Vandana Sharma, Mary Maranga, Ebenezer Foster-Nyarko, Megan Carey
academic.oup.com/nar/advance-...
AMRnet: a data visualization platform to interactively explore pathogen variants and antimicrobial resistance
Abstract. Antimicrobial resistance (AMR) poses a substantial threat to global public health. Whole genome sequencing is increasingly used as a core method
academic.oup.com
November 6, 2025 at 7:33 PM
🚨 New paper out on @narjournal.bsky.social.
Many thanks to everyone involved, especially the project leader Professor @katholt.bsky.social and the wonderful #AMRnet team: @msmicrobiocode.bsky.social, Vandana Sharma, Mary Maranga, Ebenezer Foster-Nyarko, Megan Carey
academic.oup.com/nar/advance-...
Many thanks to everyone involved, especially the project leader Professor @katholt.bsky.social and the wonderful #AMRnet team: @msmicrobiocode.bsky.social, Vandana Sharma, Mary Maranga, Ebenezer Foster-Nyarko, Megan Carey
academic.oup.com/nar/advance-...
Reposted by Zoe Anne Dyson
Distribution of capsule and O types in Klebsiella pneumoniae causing neonatal sepsis in Africa and South Asia: meta-analysis of genome-predicted serotype prevalence and potential vaccine coverage https://www.medrxiv.org/content/10.1101/2025.06.28.25330253v1
June 30, 2025 at 4:43 PM
Distribution of capsule and O types in Klebsiella pneumoniae causing neonatal sepsis in Africa and South Asia: meta-analysis of genome-predicted serotype prevalence and potential vaccine coverage https://www.medrxiv.org/content/10.1101/2025.06.28.25330253v1
Reposted by Zoe Anne Dyson
🚨 Last chance to sign up for an online space at Thursday's symposium on target trial emulation (TTE) and other frameworks
Sign up 🔽
Sign up 🔽
📈 We still have some spaces online for people to join next week's symposium on target trial emulation (TTE) and other frameworks, open to everyone working in #datascience #biostatistics & #clinicaltrials
Sign up 🔽
bit.ly/TTE_25
Sign up 🔽
bit.ly/TTE_25
June 23, 2025 at 1:21 PM
🚨 Last chance to sign up for an online space at Thursday's symposium on target trial emulation (TTE) and other frameworks
Sign up 🔽
Sign up 🔽
Reposted by Zoe Anne Dyson
Coming up next at #I3S #I3Scongress is @nisbetalice.bsky.social showing a summary of 20 years of #typhoidal #Salmonella in England & Wales. She is excited to present here as she prepares this for publication and as this is her first international talk. We are hanging around if you have any Qs.
June 25, 2025 at 9:30 AM
Coming up next at #I3S #I3Scongress is @nisbetalice.bsky.social showing a summary of 20 years of #typhoidal #Salmonella in England & Wales. She is excited to present here as she prepares this for publication and as this is her first international talk. We are hanging around if you have any Qs.
Reposted by Zoe Anne Dyson
One ceftriaxone-resistant #typhoid case last year set us on a path that is now live on Emerging Infectious Diseases.
47 cases in months, resistance rose from 0 to 5%. We spoke with patients, sequenced samples. 4.3.1.2.B1 lineage+blaCTX-M-15 on pCROB1. #AMR #PublicHealth
wwwnc.cdc.gov/eid/article/...
47 cases in months, resistance rose from 0 to 5%. We spoke with patients, sequenced samples. 4.3.1.2.B1 lineage+blaCTX-M-15 on pCROB1. #AMR #PublicHealth
wwwnc.cdc.gov/eid/article/...
Outbreak of Ceftriaxone-Resistant <em>Salmonella enterica</em> Serovar Typhi, Bangladesh, 2024
Ceftriaxone-Resistant <em>Salmonella</em> Typhi, Bangladesh
wwwnc.cdc.gov
June 23, 2025 at 4:19 PM
One ceftriaxone-resistant #typhoid case last year set us on a path that is now live on Emerging Infectious Diseases.
47 cases in months, resistance rose from 0 to 5%. We spoke with patients, sequenced samples. 4.3.1.2.B1 lineage+blaCTX-M-15 on pCROB1. #AMR #PublicHealth
wwwnc.cdc.gov/eid/article/...
47 cases in months, resistance rose from 0 to 5%. We spoke with patients, sequenced samples. 4.3.1.2.B1 lineage+blaCTX-M-15 on pCROB1. #AMR #PublicHealth
wwwnc.cdc.gov/eid/article/...
Reposted by Zoe Anne Dyson
🥇 Congratulations to @msmicrobiocode.bsky.social
who was one of the winners of the @lshtmamrcentre.bsky.social Publication Prize
She received the Staff Prize for her work analysing AMR typhoid infections in Bangladesh, Nepal, and Malawi
Find out why 🔽
www.lshtm.ac.uk/research/cen...
who was one of the winners of the @lshtmamrcentre.bsky.social Publication Prize
She received the Staff Prize for her work analysing AMR typhoid infections in Bangladesh, Nepal, and Malawi
Find out why 🔽
www.lshtm.ac.uk/research/cen...
May 12, 2025 at 8:59 AM
🥇 Congratulations to @msmicrobiocode.bsky.social
who was one of the winners of the @lshtmamrcentre.bsky.social Publication Prize
She received the Staff Prize for her work analysing AMR typhoid infections in Bangladesh, Nepal, and Malawi
Find out why 🔽
www.lshtm.ac.uk/research/cen...
who was one of the winners of the @lshtmamrcentre.bsky.social Publication Prize
She received the Staff Prize for her work analysing AMR typhoid infections in Bangladesh, Nepal, and Malawi
Find out why 🔽
www.lshtm.ac.uk/research/cen...
🧬 Out today 🧬 - our TyphiNET
#AMR surveillance dashboard for #typhoid
Use TyphiNET to view genome-derived data on global and national annual trends in AMR and circulating pathogen genotypes via any standard web browser.
genomemedicine.biomedcentral.com/articles/10....
#AMR surveillance dashboard for #typhoid
Use TyphiNET to view genome-derived data on global and national annual trends in AMR and circulating pathogen genotypes via any standard web browser.
genomemedicine.biomedcentral.com/articles/10....
The TyphiNET data visualisation dashboard: unlocking Salmonella Typhi genomics data to support public health - Genome Medicine
Background Salmonella enterica subspecies enterica serovar Typhi (abbreviated as ‘Typhi’) is the bacterial agent of typhoid fever. Effective antimicrobial therapy reduces complications and mortality; ...
genomemedicine.biomedcentral.com
May 9, 2025 at 1:16 PM
🧬 Out today 🧬 - our TyphiNET
#AMR surveillance dashboard for #typhoid
Use TyphiNET to view genome-derived data on global and national annual trends in AMR and circulating pathogen genotypes via any standard web browser.
genomemedicine.biomedcentral.com/articles/10....
#AMR surveillance dashboard for #typhoid
Use TyphiNET to view genome-derived data on global and national annual trends in AMR and circulating pathogen genotypes via any standard web browser.
genomemedicine.biomedcentral.com/articles/10....
Reposted by Zoe Anne Dyson
📣 🎉 Congratulations to Ms Gladys and @msmicrobiocode.bsky.social on winning our 2025 Publication Prize at @lshtm.bsky.social 🏆
Read more about their winning papers and impactful AMR research🔬 👇
bit.ly/4iM7uCh
Read more about their winning papers and impactful AMR research🔬 👇
bit.ly/4iM7uCh
May 6, 2025 at 1:07 PM
📣 🎉 Congratulations to Ms Gladys and @msmicrobiocode.bsky.social on winning our 2025 Publication Prize at @lshtm.bsky.social 🏆
Read more about their winning papers and impactful AMR research🔬 👇
bit.ly/4iM7uCh
Read more about their winning papers and impactful AMR research🔬 👇
bit.ly/4iM7uCh
Reposted by Zoe Anne Dyson
@msmicrobiocode.bsky.social won the Staff Prize for her work revealing that most AMR typhoid infections in Bangladesh, Nepal, and Malawi are driven by ongoing local transmission of existing resistant strains—not new variants.
May 6, 2025 at 1:07 PM
@msmicrobiocode.bsky.social won the Staff Prize for her work revealing that most AMR typhoid infections in Bangladesh, Nepal, and Malawi are driven by ongoing local transmission of existing resistant strains—not new variants.
Reposted by Zoe Anne Dyson
New year, new assemblies!
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
(1/5)
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
(1/5)
Home
A tool for generating consensus long-read assemblies for bacterial genomes - rrwick/Autocycler
github.com
December 31, 2024 at 11:43 PM
New year, new assemblies!
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
(1/5)
I'm excited to announce Autocycler, my new tool for consensus assembly of long-read bacterial genomes!
It's the successor to Trycycler, designed to be faster and less reliant on user intervention.
Check it out: github.com/rrwick/Autoc...
(1/5)