@morphonet.bsky.social
MorphoNet is an interactive viewer dedicated to 3D and 3D+t datasets made with intensity images and/or segmented data.
We would like to thank Vanessa Barone & al. for the data provided ! Read the paper here: doi.org/10.1242/dev....
CellposeSAM paper: www.biorxiv.org/content/10.1...
CellposeSAM paper: www.biorxiv.org/content/10.1...
Local and global changes in cell density induce reorganisation of 3D packing in a proliferating epithelium
Summary: The use of sea star embryogenesis as a model of a proliferating epithelium to highlight how cell division induces 3D cell rearrangements during development.
doi.org
September 8, 2025 at 11:49 AM
We would like to thank Vanessa Barone & al. for the data provided ! Read the paper here: doi.org/10.1242/dev....
CellposeSAM paper: www.biorxiv.org/content/10.1...
CellposeSAM paper: www.biorxiv.org/content/10.1...
📜 All of this, and more is featured in the preprint we published, including 5 examples with varied datasets and use cases: www.biorxiv.org/content/10.1...
Don't hesitate to send us feedback ! 🙏
Thanks to the contributors : Benjamin, Tao, Kilian, Patrick, Emmanuel & all !
Don't hesitate to send us feedback ! 🙏
Thanks to the contributors : Benjamin, Tao, Kilian, Patrick, Emmanuel & all !
MorphoNet 2.0: An innovative approach for qualitative assessment and segmentation curation of large-scale 3D time-lapse imaging datasets
Thanks to recent promising advances in AI, automated segmentation of imaging datasets has made significant strides. However, the evaluation and curation of 3D and 3D+t datasets remain extremely challe...
www.biorxiv.org
March 7, 2025 at 1:45 PM
📜 All of this, and more is featured in the preprint we published, including 5 examples with varied datasets and use cases: www.biorxiv.org/content/10.1...
Don't hesitate to send us feedback ! 🙏
Thanks to the contributors : Benjamin, Tao, Kilian, Patrick, Emmanuel & all !
Don't hesitate to send us feedback ! 🙏
Thanks to the contributors : Benjamin, Tao, Kilian, Patrick, Emmanuel & all !
What's more, you can easily view many evaluation metrics 📈, so you can assess the quality of your segmentation, and even do unsupervised quality assessment of data with no ground truth 📊 !
March 7, 2025 at 1:45 PM
What's more, you can easily view many evaluation metrics 📈, so you can assess the quality of your segmentation, and even do unsupervised quality assessment of data with no ground truth 📊 !
That's not all ! Having trouble fixing imprefections and issues in your segmentations ? MorphoNet is also a segmentation curation tool, and contains many image processing plugins to curate and refine your segmentations, without writing a line of code !🧑💻
March 7, 2025 at 1:45 PM
That's not all ! Having trouble fixing imprefections and issues in your segmentations ? MorphoNet is also a segmentation curation tool, and contains many image processing plugins to curate and refine your segmentations, without writing a line of code !🧑💻