Day 1 of #RECOMB2025​-SEQ starts with @rayanchikhi.bsky.social and an introduction to Logan, a planetary-scale effort to assemble everything.

Currently cataloguing about 700k virus species!

📄 www.biorxiv.org/content/10.1...

MMseqs2 Release 16 Highlights: GPU-accelerated search📄, ORF or new 6-frame translated search modes, contig taxonomy always keeps the longest ORF, bug fixes (reduced memory and higher sensitivity) and relicensed as MIT
📄 biorxiv.org/content/10.1...
💾 mmseqs.com and 🐍Bioconda 🖥️🧬🧶

One more freshly baked BFVD website feature:
Download the Multiple Sequence Alignments used to predict the structures or visualize MSA conservation directly in the webserver.
🖥️ bfvd.foldseek.com 🧬🧶

Learn how to predict mono-, multi-mers and conformations with the ColabFold-AlphaFold2 protocol now out in @NatureProtocols. Right in time for the Nobel Prize! It covers workflows for beginners and advanced concepts.
🚀https://rdcu.be/dWViQ
📄https://www.nature.com/articles/s41596-024-01060-5 🧬🧶

First ColabFold CASP16 prediction is online at:
casp16.colabfold.com/colabfold_ba...

Good luck and have fun to everyone! 🧬🧶

The new Awk book second edition arrived today. Awk's enduring relevance is amazing. The first ed. of the book was published before I was born and despite (because?) its age I use Awk everyday and encourage all our students to learn it.

Here are my Awk slides/colab:
docs.google.com/presentation...