mehmet can uçar
banner
mehmetcanucar.bsky.social
mehmet can uçar
@mehmetcanucar.bsky.social
new PI @University of Sheffield -using mathematical models to understand living matter

https://www.sheffield.ac.uk/mps/people/all-academic-staff/mehmet-can-ucar
Sheffield continues to surprise -I was expecting rain and steel 🥲
May 11, 2025 at 11:28 AM
..and the same day we get a definition of what a *good* theory is by @robinsall.bsky.social back here on the island 😅 @sheffielduni.bsky.social
May 7, 2025 at 2:15 PM
here's a plot showing the increase in the number of persons disappeared by ICE (data as posted by @msbr89.bsky.social):
May 4, 2025 at 9:58 AM
AND: you can easily play around with the system using VisualPDE developed by @blindmath.bsky.social!! 😍

👉 shorturl.at/kfH4I
January 9, 2025 at 1:14 PM
Turns out, mechanical nonreciprocity only affects migration dynamics when consumer cells are weakly chemotactic: For sufficiently chemotactic consumers, biochemical non-reciprocity dominates over mechanical forces!
January 9, 2025 at 10:39 AM
Importantly, after fitting our model with experimental data, we found that DC-T cell migration sits close to the optimal regime (🌟), where both co-migration and colocalization are maximized:
January 9, 2025 at 10:39 AM
Moreover, the spatial profiles of the cell populations matched the theoretical predictions:

T cells (sensors) showed a concentration peak ahead of DCs (consumers), despite being unable to migrate alone -purely driven by DC-generated gradients!
January 9, 2025 at 10:39 AM
Strikingly, as predicted by the theory:

🔹DCs (consumers) and T cells (sensors) migrated as coupled travelling waves 🌊
🔹T cells stayed at a conserved distance ahead of DCs!
January 9, 2025 at 10:39 AM
To test these predictions, we teamed up with the Sixt Lab (ISTA) to design a minimal in vitro experiment:

Dendritic cells (DCs), which shape the gradient, and T cells, acting as sensors, migrated in 1D channels, with cells continuously entering from a reservoir:
January 9, 2025 at 10:39 AM
🟢When sensor cells become more chemotactic than consumers, they can migrate ahead as a spatially localized “pulse”..

..but the sensor-consumer separation is bounded, as sensors will eventually reach the flat region of the attractant profile!
January 9, 2025 at 10:39 AM
We find that the chemotactic ability of the sensors controls a sharp transition:

🔴If sensors aren’t chemotactic enough, they can’t follow the gradients generated by consumers and fall behind, leading to an uncoupled migration dynamics.
January 9, 2025 at 10:39 AM
Inspired by our recent finding that some immune cells can’t self-generate chemical gradients (science.org/doi/10.1126/...), but can "surf" on gradients generated by other cell types, we model:

(i) Consumers: sensing & degrading chemoattractants,
(ii) Sensors: following gradients.
January 9, 2025 at 10:39 AM
Self-generated gradients guide collective cell movement -but often different cell types must move together, e.g. in immune response.

We develop a theory of self-generated chemotaxis in mixed populations -are there optimal principles for this cooperation?🤔
www.biorxiv.org/content/10.1...
January 9, 2025 at 10:39 AM
We're based in the School of Mathematical & Physical Sciences @sheffielduni.bsky.social -right next to the amazing peak district! 😍
December 2, 2024 at 5:21 PM
📣 I’m looking for PhD students to work at the intersection of theoretical physics & biology -topics range from active cell mechanics to collective cell migration & tissue patterning!

Feel free to reach out for more info (DM/email)!

Please repost / share 🙂
December 2, 2024 at 5:21 PM