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mdanalysis.bsky.social
MDAnalysis
@mdanalysis.bsky.social
Working with data in the molecular sciences. https://www.mdanalysis.org
Today's fantastic keynote "From Protein Structure to Function: Weighted Ensmebles Beyon Machine Learning" by Lillian Chong.
November 10, 2025 at 9:14 PM
Yesterday's keynote speaker Matthias Heyden on "Sub-Picosecond Timescale Information in Microsecond Simulations".
November 10, 2025 at 4:30 PM
Matthias Heyden focuses on anharmonic low-frequency vibrations, which play a critical role in #molecular behavior but are often overlooked in harmonic models. His talk will show how sub-picosecond data can reveal key insights — and how data #streaming via #MDAnalysis makes it possible.
July 18, 2025 at 2:39 PM
@ltchong.bsky.social develops methods to simulate rare but important biological events — leading the team behind @westpasoftware.bsky.social, an #OSS for weighted ensemble (WE) path sampling. Her talk will explore how #WE methods and #ML can uncover hidden protein states and rare transitions.
July 18, 2025 at 2:34 PM
Making the image not transparent (sorry!) actually shows you the simple Python code that one uses to generate it: Make a MDAnalysis AtomGroup and call the visualize() method.
December 12, 2024 at 8:47 PM