Martín
@mberacochea.bsky.social
I'm a software dev working with bioinformatics pipelines mostly. Python and Nextflow on a daily basis.
@mgnifydb.bsky.social Production Project Leader at @ebi.embl.org & Nextflow ambassador @nextflow.io
Unfrequent blogging - https://www.mberacochea.cc
@mgnifydb.bsky.social Production Project Leader at @ebi.embl.org & Nextflow ambassador @nextflow.io
Unfrequent blogging - https://www.mberacochea.cc
Reposted by Martín
🧩 Evangelos Karatzas from @ebi.embl.org presented @nf-co.re/proteinfamilies - a scalable @nextflow.io pipeline that groups uncharacterized metagenomic proteins into families, enabling functional annotation transfer
October 24, 2025 at 2:57 PM
🧩 Evangelos Karatzas from @ebi.embl.org presented @nf-co.re/proteinfamilies - a scalable @nextflow.io pipeline that groups uncharacterized metagenomic proteins into families, enabling functional annotation transfer
Reposted by Martín
Mettannotator academic.oup.com/bioinformati... provides a rich set of annotations for prokaryotic genomes, within a comprehensive NextFlow pipeline leveraging tools, databases and customised scripts to tap into gene functions for novel species.
mettannotator: a comprehensive and scalable Nextflow annotation pipeline for prokaryotic assemblies
AbstractSummary. In recent years, there has been a surge in prokaryotic genome assemblies, coming from both isolated organisms and environmental samples. T
academic.oup.com
June 27, 2025 at 1:46 PM
Mettannotator academic.oup.com/bioinformati... provides a rich set of annotations for prokaryotic genomes, within a comprehensive NextFlow pipeline leveraging tools, databases and customised scripts to tap into gene functions for novel species.
Interesting. I work on that space, in metagenomics to be more specific. I'll tinker with it and then will share some thoughts.
May 18, 2025 at 9:21 AM
Interesting. I work on that space, in metagenomics to be more specific. I'll tinker with it and then will share some thoughts.
I'm not there, but have you considered datasette for bioinformatics? A big chunk of bioinfo is wrangling csv/tsv files.
May 17, 2025 at 11:25 PM
I'm not there, but have you considered datasette for bioinformatics? A big chunk of bioinfo is wrangling csv/tsv files.
Reposted by Martín
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FAIRyMAGs Hackathon: Optimising Metagenomics Assembled Genomes building
Metagenomics Assembled Genomes building workflows are both technically and scientifically challenging, yet they are essential tools for reducing microbial dark matter, as most microbes cannot be culti...
forms.gle
April 15, 2025 at 2:13 PM
🔗 Registration: Registration is free but limited to 15 attendees onsite. Secure your spot soon!
forms.gle/KQK7arqNjqth...
Don't miss this opportunity to be part of something big!
Thanks @elixir-europe.org, @denbi.bsky.social, @ifb-elixir-fr.bsky.social for the support
forms.gle/KQK7arqNjqth...
Don't miss this opportunity to be part of something big!
Thanks @elixir-europe.org, @denbi.bsky.social, @ifb-elixir-fr.bsky.social for the support