Mario Kddb
@mario-kddb.bsky.social
PhD Student on Foundation Models in Microscopy @HTW-Berlin
We developed a method to fine-tune synthetic microscopy images to closely match real ones + pixel-perfect segmentation masks included.
Bridging the gap between synthetic and real data when labels are scarce.
Preprint: datexis.github.io/SynthMT-proj...
Bridging the gap between synthetic and real data when labels are scarce.
Preprint: datexis.github.io/SynthMT-proj...
Synthetic Data Enables Human-Grade Microtubule Analysis with Foundation Models for Segmentation
datexis.github.io
January 15, 2026 at 6:23 PM
We developed a method to fine-tune synthetic microscopy images to closely match real ones + pixel-perfect segmentation masks included.
Bridging the gap between synthetic and real data when labels are scarce.
Preprint: datexis.github.io/SynthMT-proj...
Bridging the gap between synthetic and real data when labels are scarce.
Preprint: datexis.github.io/SynthMT-proj...
Our preprint is online ⬇️
Synthetic data enables human-grade microtubule analysis with foundation models for segmentation https://www.biorxiv.org/content/10.64898/2026.01.09.698597v1
January 12, 2026 at 8:26 PM
Our preprint is online ⬇️
#SAM3 is getting a lot of attention, but how well does it work in specialized domains?
On microscopy data, it performs surprisingly well without any fine-tuning — just careful hyperparameter tuning. In fact, it reaches the same level of agreement as two human annotators.
#Preprint (under review)
On microscopy data, it performs surprisingly well without any fine-tuning — just careful hyperparameter tuning. In fact, it reaches the same level of agreement as two human annotators.
#Preprint (under review)
January 12, 2026 at 2:05 PM
First ML+BIO paper of my PhD journey submitted 🎉
Can't wait to receive the bioRxiv link to share our findings!
Can't wait to receive the bioRxiv link to share our findings!
January 9, 2026 at 9:39 PM
First ML+BIO paper of my PhD journey submitted 🎉
Can't wait to receive the bioRxiv link to share our findings!
Can't wait to receive the bioRxiv link to share our findings!
Thank you @overleaf.com for making collaboration so easy!
Just completed a paper with 5+ actively writing/reviewing authors where we worked through 300+ comments. Real-time editing with multiple people working on the same sections without a hitch.
Great piece of software :)
Just completed a paper with 5+ actively writing/reviewing authors where we worked through 300+ comments. Real-time editing with multiple people working on the same sections without a hitch.
Great piece of software :)
January 8, 2026 at 10:27 PM
Thank you @overleaf.com for making collaboration so easy!
Just completed a paper with 5+ actively writing/reviewing authors where we worked through 300+ comments. Real-time editing with multiple people working on the same sections without a hitch.
Great piece of software :)
Just completed a paper with 5+ actively writing/reviewing authors where we worked through 300+ comments. Real-time editing with multiple people working on the same sections without a hitch.
Great piece of software :)