Mehmet Akdel
makdel.bsky.social
Mehmet Akdel
@makdel.bsky.social
Reposted by Mehmet Akdel
Introducing CAMEO Structures & Complexes - automated weekly blind benchmarking of structure prediction servers. Now with heteromeric and protein-ligand complexes.
Join us and register your server now!
cameo3d.org
April 28, 2025 at 7:56 AM
Reposted by Mehmet Akdel
Some very cool stuff from the group now in paper form:

“ModelArchive: a deposition database for computational macromolecular structural models”
doi.org/10.1016/j.jm...

And

“Comparing macromolecular complexes - a fully automated benchmarking suite” doi.org/10.21203/rs.... (under review)
Redirecting
doi.org
February 21, 2025 at 5:13 PM
Reposted by Mehmet Akdel
Excited to share our latest preprint evaluating AlphaFold3, Boltz-1, Chai-1 and Protenix for predicting protein-ligand interactions, featuring our newly introduced benchmark dataset 🌹Runs N’ Poses🌹!

www.biorxiv.org/content/10.1...

🧵👇 (1/n)
Have protein-ligand co-folding methods moved beyond memorisation?
Deep learning has driven major breakthroughs in protein structure prediction, however the next critical advance is accurately predicting how proteins interact with other molecules, especially small mo...
www.biorxiv.org
February 8, 2025 at 10:02 AM
Reposted by Mehmet Akdel
Here's a year-end update from #PLINDER. It's been really great working on this project and all the other projects that it has kickstarted - the gift that keeps on giving.

Happy holidays everyone!

www.plinder.sh/blog/updates
Updates
Updates
www.plinder.sh
December 24, 2024 at 3:56 PM
Reposted by Mehmet Akdel
@jeeberhardt.bsky.social presenting CASP16 PLI baselines. Big shout out to @jeremywohlwend.bsky.social and @gcorso.bsky.social for helping us with running Boltz-1 on short notice! Pretty weird results on autotaxin.
December 3, 2024 at 5:17 PM
Reposted by Mehmet Akdel
📢 Join us this Friday for a talk by @jeremywohlwend.bsky.social & @gcorso.bsky.social on their recent publication of #Boltz-1 - a new #opensource SOTA model for 3D biomolecular structure prediction.

🕰️: Fri, Dec 06 - 4p CET/10a ET
🔗: genaiindrugdiscovery.com
December 3, 2024 at 2:00 PM
Reposted by Mehmet Akdel
@peterskrinjar.bsky.social presenting #CAMEO and #PLINDER at #CASP16 , i.e what we at the @torstenschwede.bsky.social group have been up to since last CASP in automating benchmarking of complex prediction.
December 1, 2024 at 11:04 PM