Lukas Weber
@lmweber.bsky.social
Assistant Professor of Biostatistics, Boston University. Statistical genomics, genomic data science, open science, R programming https://lmweber.org/
This effort started back in the early Visium days with our colleagues at the @lieberinstitute.bsky.social including @martinowk.bsky.social @kr-maynard.bsky.social @lcolladotor.bsky.social and others. Wonderful to have a complete release version out now. Thanks to everyone who contributed! 🧬🧠🎉
November 22, 2025 at 3:22 PM
This effort started back in the early Visium days with our colleagues at the @lieberinstitute.bsky.social including @martinowk.bsky.social @kr-maynard.bsky.social @lcolladotor.bsky.social and others. Wonderful to have a complete release version out now. Thanks to everyone who contributed! 🧬🧠🎉
Link to preprint here: www.biorxiv.org/content/10.1...
Orchestrating Spatial Transcriptomics Analysis with Bioconductor
Spatial transcriptomics technologies provide spatially-resolved measurements of gene expression through assays that can either target selected genes or capture transcriptome-wide expression profiles. ...
www.biorxiv.org
November 22, 2025 at 12:55 PM
Link to preprint here: www.biorxiv.org/content/10.1...
This was a huge effort by many contributors, in particular @helucro.bsky.social @estellayixingdong.bsky.social @rgottardo.bsky.social @markrobinsonca.bsky.social @stephaniehicks.bsky.social , and the @bioconductor.bsky.social core team and community. Thank you everyone! 🎉
November 22, 2025 at 12:38 PM
This was a huge effort by many contributors, in particular @helucro.bsky.social @estellayixingdong.bsky.social @rgottardo.bsky.social @markrobinsonca.bsky.social @stephaniehicks.bsky.social , and the @bioconductor.bsky.social core team and community. Thank you everyone! 🎉
This contains extensive code examples, workflows, datasets, and discussion on data analysis workflows for spatial transcriptomics data using Bioconductor in R. Please check it out - feedback and suggestions welcome! bioconductor.org/books/OSTA/
November 22, 2025 at 12:38 PM
This contains extensive code examples, workflows, datasets, and discussion on data analysis workflows for spatial transcriptomics data using Bioconductor in R. Please check it out - feedback and suggestions welcome! bioconductor.org/books/OSTA/