Satoshi Kawato 川戸智
@kawatosatoshi.bsky.social
Evolutionary genomics of aquatic pathogens; Assoc. Prof. at Tokyo University of Marine Science and Technology, Japan
https://researchmap.jp/satoshi_kawato?lang=en
https://researchmap.jp/satoshi_kawato?lang=en
New update for the gbdraw web app!🚀
You can now display gene labels ONLY on the first genome in the linear diagram. Just select "First" in the "Label layout" option.
Try it out here👉: gbdraw.streamlit.app
#gbdraw #bioinformatics #genomics #visualization #virology #microbiology #streamlit
You can now display gene labels ONLY on the first genome in the linear diagram. Just select "First" in the "Label layout" option.
Try it out here👉: gbdraw.streamlit.app
#gbdraw #bioinformatics #genomics #visualization #virology #microbiology #streamlit
November 24, 2025 at 2:06 PM
New update for the gbdraw web app!🚀
You can now display gene labels ONLY on the first genome in the linear diagram. Just select "First" in the "Label layout" option.
Try it out here👉: gbdraw.streamlit.app
#gbdraw #bioinformatics #genomics #visualization #virology #microbiology #streamlit
You can now display gene labels ONLY on the first genome in the linear diagram. Just select "First" in the "Label layout" option.
Try it out here👉: gbdraw.streamlit.app
#gbdraw #bioinformatics #genomics #visualization #virology #microbiology #streamlit
gbdraw v0.7.0 is now available on the bioconda channel!
I also posted some recipes for viral genome diagrams on the GitHub Discussion thread. Hope you find them useful: github.com/satoshikawat...
#gbdraw #bioinformatics #genomics #visualization #virology #microbiology
I also posted some recipes for viral genome diagrams on the GitHub Discussion thread. Hope you find them useful: github.com/satoshikawat...
#gbdraw #bioinformatics #genomics #visualization #virology #microbiology
October 30, 2025 at 3:01 PM
gbdraw v0.7.0 is now available on the bioconda channel!
I also posted some recipes for viral genome diagrams on the GitHub Discussion thread. Hope you find them useful: github.com/satoshikawat...
#gbdraw #bioinformatics #genomics #visualization #virology #microbiology
I also posted some recipes for viral genome diagrams on the GitHub Discussion thread. Hope you find them useful: github.com/satoshikawat...
#gbdraw #bioinformatics #genomics #visualization #virology #microbiology
🚀gbdraw v0.7.0 is out!
- Feature overlap resolution
- Gradated BLAST hit ribbons
- Ruler-style scale
- Top/bottom legend placement
- Optimized defaults (for small genomes)
Try out: 👉 gbdraw.streamlit.app
#gbdraw #bioinformatics #genomics #visualization #virology
- Feature overlap resolution
- Gradated BLAST hit ribbons
- Ruler-style scale
- Top/bottom legend placement
- Optimized defaults (for small genomes)
Try out: 👉 gbdraw.streamlit.app
#gbdraw #bioinformatics #genomics #visualization #virology
October 26, 2025 at 1:34 PM
🚀gbdraw v0.7.0 is out!
- Feature overlap resolution
- Gradated BLAST hit ribbons
- Ruler-style scale
- Top/bottom legend placement
- Optimized defaults (for small genomes)
Try out: 👉 gbdraw.streamlit.app
#gbdraw #bioinformatics #genomics #visualization #virology
- Feature overlap resolution
- Gradated BLAST hit ribbons
- Ruler-style scale
- Top/bottom legend placement
- Optimized defaults (for small genomes)
Try out: 👉 gbdraw.streamlit.app
#gbdraw #bioinformatics #genomics #visualization #virology
🚀 Released gbdraw v0.6.0!
- Added dinucleotide skew plotting to linear mode. Fixed the bug where only GC skew could be drawn.
- Added links to relevant sections of the documentation throughout the web app help menu.
Try out:👉 gbdraw.streamlit.app
- Added dinucleotide skew plotting to linear mode. Fixed the bug where only GC skew could be drawn.
- Added links to relevant sections of the documentation throughout the web app help menu.
Try out:👉 gbdraw.streamlit.app
October 9, 2025 at 2:01 PM
🚀 Released gbdraw v0.6.0!
- Added dinucleotide skew plotting to linear mode. Fixed the bug where only GC skew could be drawn.
- Added links to relevant sections of the documentation throughout the web app help menu.
Try out:👉 gbdraw.streamlit.app
- Added dinucleotide skew plotting to linear mode. Fixed the bug where only GC skew could be drawn.
- Added links to relevant sections of the documentation throughout the web app help menu.
Try out:👉 gbdraw.streamlit.app
Released gbdraw v0.5.3! 🚀
- Smarter layout engine: reduced overlapping labels, legends, or definitions (linear mode)
- Circular mode: genomes >5 Mb now show tick labels in megabases (Mb)
- Official Documentation published with full guides & tutorials
🔗 gbdraw.streamlit.app
- Smarter layout engine: reduced overlapping labels, legends, or definitions (linear mode)
- Circular mode: genomes >5 Mb now show tick labels in megabases (Mb)
- Official Documentation published with full guides & tutorials
🔗 gbdraw.streamlit.app
September 29, 2025 at 8:25 AM
Released gbdraw v0.5.3! 🚀
- Smarter layout engine: reduced overlapping labels, legends, or definitions (linear mode)
- Circular mode: genomes >5 Mb now show tick labels in megabases (Mb)
- Official Documentation published with full guides & tutorials
🔗 gbdraw.streamlit.app
- Smarter layout engine: reduced overlapping labels, legends, or definitions (linear mode)
- Circular mode: genomes >5 Mb now show tick labels in megabases (Mb)
- Official Documentation published with full guides & tutorials
🔗 gbdraw.streamlit.app
令和７年度日本水産学会秋季大会でgbdrawをお披露目しました。こちらが学会で発表したポスターです。
gbdrawは、ブラウザ上で環状・直鎖ゲノムを描画できるウェブアプリ (ローカルCUI版あり) です。論文や発表の図作成にぜひご活用ください。
gbdraw.streamlit.app
github.com/satoshikawat...
gbdrawは、ブラウザ上で環状・直鎖ゲノムを描画できるウェブアプリ (ローカルCUI版あり) です。論文や発表の図作成にぜひご活用ください。
gbdraw.streamlit.app
github.com/satoshikawat...
September 25, 2025 at 1:48 PM
令和７年度日本水産学会秋季大会でgbdrawをお披露目しました。こちらが学会で発表したポスターです。
gbdrawは、ブラウザ上で環状・直鎖ゲノムを描画できるウェブアプリ (ローカルCUI版あり) です。論文や発表の図作成にぜひご活用ください。
gbdraw.streamlit.app
github.com/satoshikawat...
gbdrawは、ブラウザ上で環状・直鎖ゲノムを描画できるウェブアプリ (ローカルCUI版あり) です。論文や発表の図作成にぜひご活用ください。
gbdraw.streamlit.app
github.com/satoshikawat...
Draw the largest bacterial genome in 10 seconds.
Try out: gbdraw.streamlit.app
Try out: gbdraw.streamlit.app
September 8, 2025 at 7:58 AM
Draw the largest bacterial genome in 10 seconds.
Try out: gbdraw.streamlit.app
Try out: gbdraw.streamlit.app
Just released gbdraw v0.5.0! 🚀
- Support for GFF3+FASTA format input
- New label whitelist feature
- Local GUI version (optional; requires extra installation of Streamlit)
Please try our web app version until the Bioconda release is complete.
Check it out! gbdraw.streamlit.app
- Support for GFF3+FASTA format input
- New label whitelist feature
- Local GUI version (optional; requires extra installation of Streamlit)
Please try our web app version until the Bioconda release is complete.
Check it out! gbdraw.streamlit.app
September 1, 2025 at 3:00 PM
Just released gbdraw v0.5.0! 🚀
- Support for GFF3+FASTA format input
- New label whitelist feature
- Local GUI version (optional; requires extra installation of Streamlit)
Please try our web app version until the Bioconda release is complete.
Check it out! gbdraw.streamlit.app
- Support for GFF3+FASTA format input
- New label whitelist feature
- Local GUI version (optional; requires extra installation of Streamlit)
Please try our web app version until the Bioconda release is complete.
Check it out! gbdraw.streamlit.app
gbdraw v0.4.0 released!
- Label blacklist
- Custom label qualifiers
- Adjustable label arcs & font size
- Configurable axis color & width
Install with mamba or try online: gbdraw.streamlit.app
- Label blacklist
- Custom label qualifiers
- Adjustable label arcs & font size
- Configurable axis color & width
Install with mamba or try online: gbdraw.streamlit.app
August 9, 2025 at 5:48 AM
gbdraw v0.4.0 released!
- Label blacklist
- Custom label qualifiers
- Adjustable label arcs & font size
- Configurable axis color & width
Install with mamba or try online: gbdraw.streamlit.app
- Label blacklist
- Custom label qualifiers
- Adjustable label arcs & font size
- Configurable axis color & width
Install with mamba or try online: gbdraw.streamlit.app
I’ve improved the label rendering features in the gbdraw web app:
- selectively hide labels via a blacklist
- qualifier display priority customization
- adjustable label arcs
These updates make it easier to visualize larger genomes without layout issues.
gbdraw.streamlit.app
- selectively hide labels via a blacklist
- qualifier display priority customization
- adjustable label arcs
These updates make it easier to visualize larger genomes without layout issues.
gbdraw.streamlit.app
August 6, 2025 at 2:19 AM
I’ve improved the label rendering features in the gbdraw web app:
- selectively hide labels via a blacklist
- qualifier display priority customization
- adjustable label arcs
These updates make it easier to visualize larger genomes without layout issues.
gbdraw.streamlit.app
- selectively hide labels via a blacklist
- qualifier display priority customization
- adjustable label arcs
These updates make it easier to visualize larger genomes without layout issues.
gbdraw.streamlit.app
I’ve updated the web app for the genome visualization tool 𝙜𝙗𝙙𝙧𝙖𝙬!
- You can now place labels on the inner edge of circular genomes.
- Edit the color palette directly within the app.
👉Try it out: gbdraw.streamlit.app
- You can now place labels on the inner edge of circular genomes.
- Edit the color palette directly within the app.
👉Try it out: gbdraw.streamlit.app
July 23, 2025 at 2:27 PM
I’ve updated the web app for the genome visualization tool 𝙜𝙗𝙙𝙧𝙖𝙬!
- You can now place labels on the inner edge of circular genomes.
- Edit the color palette directly within the app.
👉Try it out: gbdraw.streamlit.app
- You can now place labels on the inner edge of circular genomes.
- Edit the color palette directly within the app.
👉Try it out: gbdraw.streamlit.app
The genome visualization tool gbdraw is now available as a Streamlit web app. Try it out:
gbdraw.streamlit.app
gbdraw.streamlit.app
July 17, 2025 at 9:34 AM
The genome visualization tool gbdraw is now available as a Streamlit web app. Try it out:
gbdraw.streamlit.app
gbdraw.streamlit.app
Built a web app to visualize BLASTN/TBLASTX XML results as SVG dotplots. Try it out:
blast2dotplot.streamlit.app
blast2dotplot.streamlit.app
July 16, 2025 at 9:35 AM
Built a web app to visualize BLASTN/TBLASTX XML results as SVG dotplots. Try it out:
blast2dotplot.streamlit.app
blast2dotplot.streamlit.app
Made a Streamlit web app to plot GC skew in microbial genomes. Check it out:
skewplot.streamlit.app
skewplot.streamlit.app
July 13, 2025 at 10:43 AM
Made a Streamlit web app to plot GC skew in microbial genomes. Check it out:
skewplot.streamlit.app
skewplot.streamlit.app
Made a Streamlit web app for ORF prediction. Check it out:
orfind.streamlit.app
orfind.streamlit.app
July 13, 2025 at 10:43 AM
Made a Streamlit web app for ORF prediction. Check it out:
orfind.streamlit.app
orfind.streamlit.app
gbdraw v0.2.0 released — now shipping with 55 color palettes!
Google Colab version also available:
github.com/satoshikawat...
Google Colab version also available:
github.com/satoshikawat...
May 26, 2025 at 2:04 PM
gbdraw v0.2.0 released — now shipping with 55 color palettes!
Google Colab version also available:
github.com/satoshikawat...
Google Colab version also available:
github.com/satoshikawat...
Just released: gbdraw, a lightweight genome diagram generator.
Visualize annotated genomes with a single command.
github.com/satoshikawat...
Visualize annotated genomes with a single command.
github.com/satoshikawat...
May 16, 2025 at 5:58 AM
Just released: gbdraw, a lightweight genome diagram generator.
Visualize annotated genomes with a single command.
github.com/satoshikawat...
Visualize annotated genomes with a single command.
github.com/satoshikawat...
Although still partially implemented, the genome visualization program gbdraw is now available for trial use on Colab Notebook.
colab.research.google.com/github/satos...
colab.research.google.com/github/satos...
May 8, 2025 at 12:27 PM
Although still partially implemented, the genome visualization program gbdraw is now available for trial use on Colab Notebook.
colab.research.google.com/github/satos...
colab.research.google.com/github/satos...
I gave a lecture on bacterial genome analysis for international researchers. The teaching assistants and the technical staff handled nearly all participant support. My sincere thanks to everyone who kept the practical sessions running smoothly
April 14, 2025 at 3:06 PM
I gave a lecture on bacterial genome analysis for international researchers. The teaching assistants and the technical staff handled nearly all participant support. My sincere thanks to everyone who kept the practical sessions running smoothly
新入生向けの体験航海で実習船神鷹丸に乗船しました。東京湾を一望しました
April 10, 2025 at 3:17 PM
新入生向けの体験航海で実習船神鷹丸に乗船しました。東京湾を一望しました
Pacific white shrimp 𝘓𝘪𝘵𝘰𝘱𝘦𝘯𝘢𝘦𝘶𝘴 𝘷𝘢𝘯𝘯𝘢𝘮𝘦𝘪
March 27, 2025 at 8:48 AM
Pacific white shrimp 𝘓𝘪𝘵𝘰𝘱𝘦𝘯𝘢𝘦𝘶𝘴 𝘷𝘢𝘯𝘯𝘢𝘮𝘦𝘪
Belated Happy New Year🦐
January 3, 2025 at 3:40 AM
Belated Happy New Year🦐
October 19, 2024 at 11:10 AM
Inkscape is the best
February 7, 2024 at 4:37 PM
Inkscape is the best