Josh Moore
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joshmoore.bsky.social
Josh Moore
@joshmoore.bsky.social
1.4K followers 740 following 41 posts
Technical Director – @gerbi-gmb.de | Standardizing open bioimaging data infrastructure

TA1 lead for @nfdi4bioimage.bsky.social
#OSS Maintainer for @openmicroscopy.org and @zarr.dev
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joshmoore.bsky.social
🚀 We’re hiring again! Join @gerbi-gmb.de as a Software Developer!

💻 Build scalable #bioimaging solutions

🌍 Collaborate globally

🎯 Contribute to open science through #OME #Zarr

📣 Tell your #NGFF friends.

Remote, full-time. Apply by 30 June 2025: All submissions via bit.ly/gerbi-jobs-2...
Screenshot of the PDF available at https://cloud.gerbi-gmb.de/s/6LrYfMByymPnHP5/download/2025_OME-Zarr_sw_developer.pdf Screenshot of the PDF available at https://cloud.gerbi-gmb.de/s/y4rBGFM6dXn8Jkr/download/2025_OME-Zarr_web_developer.pdf
June 11, 2025 at 8:26 AM
joshmoore.bsky.social
Can't believe I missed this -- I owe you a Microscopy Pony.
A pony in dark blue with a mane of red and light blue, a green tail, an OME logo on zir cheek (with the same red, green, and light blue), and a microscope beauty mark in whie.
March 31, 2025 at 7:12 PM
joshmoore.bsky.social
First OMERO.figure of #TiM2025 🤩 All credits to @nfdi4bioimage.bsky.social Data Steward Cornelia Wetzker of @tudresden.bsky.social

See omero.tim2025.de/figure/file/... if you'd like to play with the data yourself in #OMERO
2x3 panel image generated by OMERO.figure. The left column is titled "confocal image". The right column "STED image". The top-row shows all three channels (chromatin/vimentin, tomm20/clock, nup107) at 10 micrometers. The next row shows a cropped region at 2 micrometers. The bottom row shows only the the nup107 channel in grayscale.
March 19, 2025 at 8:16 AM
joshmoore.bsky.social
Kudos to Matthew Hartley of the @bioimagearchive.bsky.social for his message of global collaboration in the #bioimaging community @ #TiM2025

👏👏👏
A photo of Matthew Hartley of the BioImage Archive standing at a podium in front of a slide showing the flags of 43 different countries which are making use of the image archive.
March 18, 2025 at 1:37 PM
joshmoore.bsky.social
Look at all of those #OMEZarrs! 🤩
Screenshare of a 3D rendering in neuroglancer. Available under "View tomogram" on the following page: https://cryoetdataportal.czscience.com/runs/16497?deposition-id=10330
February 21, 2025 at 10:22 AM
joshmoore.bsky.social
🐘2🦋 fediscience.org/@c4r510@mast...

The esteemable Carsten Fortmann-Grote has linked metadata in the #ELN #OpenBIS with metadata in the #bioimage resource #OMERO answering:

"How many images are present in omero for a given sample in OpenBIS? 🤔"

#LinkedOpenData #FAIR
sparql query and response against a knowledge graph for microbial population biology
January 17, 2025 at 12:27 PM
joshmoore.bsky.social
And now a reminder on bsky: AMER/AU/EU-friendly #NGFF & Friends Office Hours are starting in 15 minutes.

If you have questions, feel free to stop by!

ngff.openmicroscopy.org/community/
Kit talking to their therapist about data handling nightmares. The drawing titled "Kit's deluge" by Henning Falk, ©2022 NumFOCUS, is used under a CC BY 4.0 license. Modifications to this photo include cropping.
February 7, 2024 at 4:45 PM