Jonas Beck
@jnsbck.de
Inference in biophysical neuron models. PhD student at Hertie AI / Uni Tuebingen with @celltypist.bsky.social.
Reposted by Jonas Beck
Our work on training biophysical models with Jaxley is now out in @natmethods.nature.com. Led by @deismic.bsky.social, with @philipp.hertie.ai, @ppjgoncalves.bsky.social & @jakhmack.bsky.social et al.
Paper: www.nature.com/articles/s41...
Paper: www.nature.com/articles/s41...
Jaxley: differentiable simulation enables large-scale training of detailed biophysical models of neural dynamics - Nature Methods
Jaxley is a versatile platform for biophysical modeling in neuroscience. It allows efficiently simulating large-scale biophysical models on CPUs, GPUs and TPUs. Model parameters can be optimized with ...
www.nature.com
November 13, 2025 at 1:08 PM
Our work on training biophysical models with Jaxley is now out in @natmethods.nature.com. Led by @deismic.bsky.social, with @philipp.hertie.ai, @ppjgoncalves.bsky.social & @jakhmack.bsky.social et al.
Paper: www.nature.com/articles/s41...
Paper: www.nature.com/articles/s41...
Thrilled this is finally out! Heads off to @deismic.bsky.social and thanks for the amazing collaborative effort on this! Excited to see what people do with this :)
I am super happy to share that our project on training biophysical models with Jaxley is now published in Nature Methods: www.nature.com/articles/s41...
Jaxley: differentiable simulation enables large-scale training of detailed biophysical models of neural dynamics - Nature Methods
Jaxley is a versatile platform for biophysical modeling in neuroscience. It allows efficiently simulating large-scale biophysical models on CPUs, GPUs and TPUs. Model parameters can be optimized with ...
www.nature.com
November 13, 2025 at 6:13 PM
Thrilled this is finally out! Heads off to @deismic.bsky.social and thanks for the amazing collaborative effort on this! Excited to see what people do with this :)
Reposted by Jonas Beck
At the European Retina Meeting and interested in biophysical modeling of the retina? Come stop by my poster (#081) tomorrow!
September 22, 2025 at 9:27 AM
At the European Retina Meeting and interested in biophysical modeling of the retina? Come stop by my poster (#081) tomorrow!
Reposted by Jonas Beck
We spent a year writing this review of low-dim embeddings and arguing about things like epistemic roles and best practices :-) 20+ authors are all participants of the Dagstuhl seminar we held last year: www.dagstuhl.de/24122. Led by @alexandr.bsky.social and Cyril de Bodt.
arxiv.org/abs/2508.15929
arxiv.org/abs/2508.15929
August 27, 2025 at 3:14 PM
We spent a year writing this review of low-dim embeddings and arguing about things like epistemic roles and best practices :-) 20+ authors are all participants of the Dagstuhl seminar we held last year: www.dagstuhl.de/24122. Led by @alexandr.bsky.social and Cyril de Bodt.
arxiv.org/abs/2508.15929
arxiv.org/abs/2508.15929
Reposted by Jonas Beck
Looky Looky! 😍🥳👏
arxiv.org/abs/2508.12939
Super fun project, I ❤️ed coauthoring w/ @sbi-devs.bsky.social.
Great lead by @deismic.bsky.social & @janboelts.bsky.social. Contribs by many talented people @jakhmack.bsky.social. 🙏 to #BenjaminKurtMiller for the kickstart! @helmholtzai.bsky.social
arxiv.org/abs/2508.12939
Super fun project, I ❤️ed coauthoring w/ @sbi-devs.bsky.social.
Great lead by @deismic.bsky.social & @janboelts.bsky.social. Contribs by many talented people @jakhmack.bsky.social. 🙏 to #BenjaminKurtMiller for the kickstart! @helmholtzai.bsky.social
Simulation-Based Inference: A Practical Guide
A central challenge in many areas of science and engineering is to identify model parameters that are consistent with prior knowledge and empirical data. Bayesian inference offers a principled framewo...
arxiv.org
August 19, 2025 at 7:32 AM
Looky Looky! 😍🥳👏
arxiv.org/abs/2508.12939
Super fun project, I ❤️ed coauthoring w/ @sbi-devs.bsky.social.
Great lead by @deismic.bsky.social & @janboelts.bsky.social. Contribs by many talented people @jakhmack.bsky.social. 🙏 to #BenjaminKurtMiller for the kickstart! @helmholtzai.bsky.social
arxiv.org/abs/2508.12939
Super fun project, I ❤️ed coauthoring w/ @sbi-devs.bsky.social.
Great lead by @deismic.bsky.social & @janboelts.bsky.social. Contribs by many talented people @jakhmack.bsky.social. 🙏 to #BenjaminKurtMiller for the kickstart! @helmholtzai.bsky.social
Reposted by Jonas Beck
We are looking for an HPC Compute Cluster administrator to contribute to our ML Cloud! jobs.medizin.uni-tuebingen.de/Job/3574/HPC...
November 8, 2023 at 9:13 AM
We are looking for an HPC Compute Cluster administrator to contribute to our ML Cloud! jobs.medizin.uni-tuebingen.de/Job/3574/HPC...
Reposted by Jonas Beck
Ever wanted to do deep learning with a neural net that is one-to-one mapped to 65.05% of the fruit fly brain? 😄
Before this year ends, I will quickly advertise our code release of `flyvis.`
Docs: t.ly/YqWzR
Repo: t.ly/pMWpp
Work with @jakhmack.bsky.social, @srinituraga.bsky.social and colleagues
Before this year ends, I will quickly advertise our code release of `flyvis.`
Docs: t.ly/YqWzR
Repo: t.ly/pMWpp
Work with @jakhmack.bsky.social, @srinituraga.bsky.social and colleagues
December 30, 2024 at 8:38 PM
Ever wanted to do deep learning with a neural net that is one-to-one mapped to 65.05% of the fruit fly brain? 😄
Before this year ends, I will quickly advertise our code release of `flyvis.`
Docs: t.ly/YqWzR
Repo: t.ly/pMWpp
Work with @jakhmack.bsky.social, @srinituraga.bsky.social and colleagues
Before this year ends, I will quickly advertise our code release of `flyvis.`
Docs: t.ly/YqWzR
Repo: t.ly/pMWpp
Work with @jakhmack.bsky.social, @srinituraga.bsky.social and colleagues