Jason Chou
jchou.bsky.social
Jason Chou
@jchou.bsky.social
MD/PhD student at the University of Pittsburgh-Carnegie Mellon University MSTP. Interested in computational neuroscience and cognition.
Reposted by Jason Chou
Delighted to share our new Perspective article @natrevneuro.nature.com, led by the great @edoardochidichimo.bsky.social : "Towards an informational account of interpersonal coordination". With @loopyluppi.bsky.social, Pedro Mediano, @introspection.bsky.social, Victoria Leong and Richard Bethlehem.
November 19, 2025 at 2:27 PM
Reposted by Jason Chou
I couldn't (happily) disagree more! 😊

We're living in a golden age of ever larger simultaneous recordings. Perturbation is not far behind.

Everything we could want? Nooo. Getting closer fast and getting ever better? Yeesss!

E.g.: the most fun I've had in 34 years in Neuro: bit.ly/BondyCharlto...
Brain-wide coordination of internal signals during decision-making
Neural activity is often analyzed with respect to external referents, such as the onset of a sensory stimulus or an overt motor action. Simultaneous recordings allow referencing neurons’ activity to e...
bit.ly
November 17, 2025 at 3:36 AM
Reposted by Jason Chou
Dimensionality reduction can see structures that do not exist and miss structures that exist.

𝐓𝐡𝐞 𝐬𝐢𝐦𝐩𝐥𝐞𝐬𝐭 𝐞𝐱𝐩𝐥𝐚𝐧𝐚𝐭𝐢𝐨𝐧 𝐢𝐬𝐧’𝐭 𝐚𝐥𝐰𝐚𝐲𝐬 𝐭𝐡𝐞 𝐛𝐞𝐬𝐭 𝐨𝐧𝐞.

1/n
November 14, 2025 at 12:45 PM
Reposted by Jason Chou
Our next paper on comparing dynamical systems (with special interest to artificial and biological neural networks) is out!! Joint work with @annhuang42.bsky.social , as well as @satpreetsingh.bsky.social , @leokoz8.bsky.social , Ila Fiete, and @kanakarajanphd.bsky.social : arxiv.org/pdf/2510.25943
November 10, 2025 at 4:16 PM
Reposted by Jason Chou
Hidden Markov Models
Speaking of HMMs, really enjoyed this paper on dynamics underlying resting state and other conditions. The idea of a baseline state from which excursions lead to more integrated states is really interesting.
doi.org/10.7554/eLif...
#neuroskyence
November 9, 2025 at 3:03 PM
Reposted by Jason Chou
How do VTA DA neurons sculpt downstream representations to reinforce actions? VERY excited about our new preprint (by Alex Pan Vazquez & @czimmerman.bsky.social )
VTA dopamine neuron activity produces spatially organized value representations https://www.biorxiv.org/content/10.1101/2025.11.04.685995v1
November 7, 2025 at 8:46 PM
Reposted by Jason Chou
Ephaptic coupling - it's a thing. Your brain does it.
Reproducible Human Neural Circuits Printed with Single-Cell Precision Reveal the Functional Roles of Ephaptic Coupling
pubs.acs.org/doi/full/10....
#neuroscience
Reproducible Human Neural Circuits Printed with Single-Cell Precision Reveal the Functional Roles of Ephaptic Coupling
Although in vitro neuronal models are accessible and versatile systems for functional electrophysiological studies, the spontaneous and random formation of neural circuits often compromises the structural control and reproducibility. Here, we introduce a robust method for engineering human neuronal networks in vitro with single-cell precision and reproducibility. Our integrated platform combines direct laser-written microstructure templates and soft lithography-based fabrication of microscaffolds with functional multielectrode array recordings. This system enables high-throughput production of diverse circuit designs and allows for the exact placement of neurons within confined microenvironments. The system enables precise recording of spontaneous neuronal activity, as well as electrical and optogenetic stimulations. Using this approach, we constructed reproducible, bottom-up neuronal circuits composed of a defined number of human neurons. As a proof of principle, we employed these circuits to investigate ephaptic coupling, which refers to the modulation of neuronal activity by endogenous electric fields. Although it is believed to play a role in neural computations and cardiac conduction and is associated with epilepsy and arrhythmia, its mechanisms are unclear due to limitations in experimental models, both in vivo and in vitro. By controlling axonal proximity within microchannels and the number of neurons in the engineered circuits, we can quantify ephaptic coupling at different strengths, which validates theoretical predictions, including reduced action potential velocity, increased activity synchronization, and lower stimulation thresholds. Furthermore, the platform has broad potential for studying synaptic and nonsynaptic interactions, myelination processes, advancing disease modeling, and fundamental neuroscience research.
pubs.acs.org
October 30, 2025 at 11:49 AM
Reposted by Jason Chou
New paper in Imaging Neuroscience by Jeanette A. Mumford, Russell A. Poldrack, et al:

Unintended bias in the pursuit of collinearity solutions in fMRI analysis

doi.org/10.1162/IMAG...
October 25, 2025 at 5:29 AM
Reposted by Jason Chou
Reposted by Jason Chou
rdcu.be/eIyQB

Now published in Neuropsychopharmacology, here we mimicked the striatal neuroinflammation seen in the brains of individuals with compulsive disorders and found that this facilitated goal-directed action, whereas activating the Gi pathway in astrocytes prevented it
Dorsomedial striatal neuroinflammation causes excessive goal-directed action control by disrupting astrocyte function
Neuropsychopharmacology - Dorsomedial striatal neuroinflammation causes excessive goal-directed action control by disrupting astrocyte function
rdcu.be
September 29, 2025 at 12:38 AM
Reposted by Jason Chou
The interoceptive origin of reinforcement learning

This Review article represents a true quest for the Holy Grail: the origin of reward!

In short, reward originates deep within our bodies, in our viscera, and not in the external environment!

www.sciencedirect.com/science/arti...

1/n
September 23, 2025 at 4:24 PM
Reposted by Jason Chou
This is one of the most outstanding examples of circuit understanding I've seen in a long time. The unification of theory and experiment is beautiful.

When Malcolm presented this in my lab, the audience was cheering at the end, and one person shouted (non-ironically) "You did it!"
🚨Our preprint is online!🚨

www.biorxiv.org/content/10.1...

How do #dopamine neurons perform the key calculations in reinforcement #learning?

Read on to find out more! 🧵
September 19, 2025 at 1:37 PM
Reposted by Jason Chou
𝗕𝗿𝗮𝗶𝗻-𝘄𝗶𝗱𝗲 𝗰𝗼𝗺𝗽𝘂𝘁𝗮𝘁𝗶𝗼𝗻𝘀
Spatially distributed and regionally unbound cellular resolution brain-wide processing loops in mice
𝗕𝗿𝗮𝗶𝗻 𝗿𝗲𝗴𝗶𝗼𝗻𝘀 𝗼𝗿 𝗱𝘆𝗻𝗮𝗺𝗶𝗰 𝘁𝗵𝗿𝗲𝗮𝗱𝘀?
Dynamical processing winding through most brain regions.
Looks like a must read.
www.biorxiv.org/content/10.1...
#neuroskyence
Spatially distributed and regionally unbound cellular resolution brain-wide processing loops in mice
Until recently, it has been possible to examine activity in the brain globally through regional averaging or locally at cellular resolution. These studies characterized regions as functionally homogen...
www.biorxiv.org
September 9, 2025 at 4:17 PM
Reposted by Jason Chou
Reposted by Jason Chou
𝗕𝗿𝗮𝗶𝗻-𝗯𝗼𝗱𝘆 𝗽𝗵𝘆𝘀𝗶𝗼𝗹𝗼𝗴𝘆:
𝗟𝗼𝗰𝗮𝗹, 𝗿𝗲𝗳𝗹𝗲𝘅, 𝗮𝗻𝗱 𝗰𝗲𝗻𝘁𝗿𝗮𝗹 𝗰𝗼𝗺𝗺𝘂𝗻𝗶𝗰𝗮𝘁𝗶𝗼𝗻
Excellent review paper about reactive and anticipatory processes.
#neuroskyence
doi.org/10.1016/j.ce...
September 7, 2025 at 5:45 PM
Reposted by Jason Chou
Excited to share my latest work with @jonathanamichaels.bsky.social @diedrichsenjorn.bsky.social & @andpru.bsky.social!
We asked: How does the motor cortex account for arm posture when generating movement?
Paper 👉 www.biorxiv.org/content/10.1...
1/10
Compositional neural dynamics during reaching
The complex mechanics of the arm make the neural control of reaching inherently posture dependent. Because previous reaching studies confound reach direction with final posture, it remains unknown how...
www.biorxiv.org
September 6, 2025 at 1:12 PM
Reposted by Jason Chou
I’m sorry I can’t hang this weekend I’m still processing learning about these ants that have been cloning and giving birth to a different species of ant for millions of years to maintain their own species survival www.nature.com/articles/s41...
One mother for two species via obligate cross-species cloning in ants - Nature
In a case of obligate cross-species cloning, female ants of Messor ibericus need to clone males of Messor structor to obtain sperm for producing the worker caste, resulting in males from the same moth...
www.nature.com
September 5, 2025 at 11:10 PM
Reposted by Jason Chou
Emergence is something we should be thinking deeply about in computational neuroscience. When we say 'computation through dynamics' what we're really talking about is different types of emergent computation (probably Type 1-2 as defined here)

@seanmcarroll.bsky.social
arxiv.org/abs/2410.15468
What Emergence Can Possibly Mean
We consider emergence from the perspective of dynamics: states of a system evolving with time. We focus on the role of a decomposition of wholes into parts, and attempt to characterize relationships b...
arxiv.org
September 3, 2025 at 7:09 PM
Reposted by Jason Chou
Mice are always smarter that we expect, here guessing the trail ahead rather than just blind following. Cool work:
We watched mice follow scent trails drawn on an “endless” treadmill. By manipulating trail geometry/statistics, perturbing mouse nose & brain, and modeling behavior with a Bayesian framework, we show that mice use predictive (rather than reactive) strategies.
September 1, 2025 at 7:12 PM
Reposted by Jason Chou
Are interoception and mental health linked? Many assume so, with interoception even described as a psychiatric “p-factor.” But in our latest preprint, we were surprised to find little evidence for such a connection. www.medrxiv.org/content/10.1... 🧵 Thread with our reflections on the matter 👇
Interoceptive Ability is Unrelated to Mental Health Symptoms: Evidence From a Large Scale Multi-Domain Psychophysical Investigation
Interoception-the sensing and perception of the internal viscera-is widely cast as a transdiagnostic mechanism linking brain-body interaction to mental illness. Prevailing models propose that altered ...
www.medrxiv.org
August 27, 2025 at 4:17 PM
Reposted by Jason Chou
𝗖𝗼𝗴𝗻𝗶𝘁𝗶𝗼𝗻 𝗶𝘀 𝗲𝗺𝗲𝗿𝗴𝗲𝗻𝘁 𝗶𝗻 𝘁𝗵𝗲 𝗯𝗿𝗮𝗶𝗻
by Earl K Miller, Scott L Brincat, Jefferson E Roy
This promises to be a must read
One day we should create an online journal club to just read these kinds of papers!
#neuroskyence
doi.org/10.1016/j.co...
August 16, 2025 at 3:05 PM
Reposted by Jason Chou
𝗘𝗺𝗲𝗿𝗴𝗲𝗻𝗰𝗲
Sharing given the useful references (400+).
Haven't checked the content.
arxiv.org/abs/2508.08548
Emergence: from physics to biology, sociology, and computer science
Many systems involve numerous interacting parts and the whole system can have properties that the individual parts do not. I take this novelty as the defining characteristic of an emergent property. O...
arxiv.org
August 15, 2025 at 6:31 PM
Reposted by Jason Chou
This had me laughing to tears. The person sitting next to me on the flight must have thought I was nuts.

A must read for the FEP curious.

www.researchgate.net/publication/...
(PDF) The Exit Manual: How to Leave the Free Energy Cult and Still Get Tenure
PDF | This manual is not a plea. It is a jailbreak from a cult—the Free Energy Principle, a theoretical metastasis that began in computational... | Find, read and cite all the research you need on Res...
www.researchgate.net
August 15, 2025 at 7:04 PM
Reposted by Jason Chou
Are similar representations in neural nets evidence of shared computation? In new theory work w/ Lukas Braun (lukasbraun.com) & @saxelab.bsky.social, we prove that representational comparisons are ill-posed in general, unless networks are efficient.

@icmlconf.bsky.social @cogcompneuro.bsky.social
August 13, 2025 at 11:31 AM