Javier F Favieres
LightNews LightNews
banner
javierffavieres.bsky.social
Javier F Favieres
@javierffavieres.bsky.social
35 followers 77 following 0 posts
PhD student at UCM, Madrid. Interested in bacterial genomics and molecular epidemiology
Posts Replies Media Videos
Reposted by Javier F Favieres
rachelmwheatley.bsky.social
🔊 Job Opportunity: Postdoctoral Research Fellow in Bacterial Evolution.

Looking to recruit a postdoc to join a UKRI FLF-funded project on antibiotic resistance evolution in the microbiome 🦠

3 years funding, deadline 26th Jan, please share!
hrwebapp.qub.ac.uk/tlive_webrec...
Job profile
hrwebapp.qub.ac.uk
January 5, 2026 at 10:00 AM
Reposted by Javier F Favieres
sylvainbrisse.bsky.social
Dear #AMR #genomics and big data community: please be informed that the programme of the Wellcome AMR conference in Hinxton on March 23-26th is now online: coursesandconferences.wellcomeconnectingscience.org/event/antimi... - please register before Feb 24th for onsite participation
Antimicrobial Resistance – Genomes, Big Data and Emerging Technologies — 20260323
Highlighting the importance of genomic data in the fight against AMR
coursesandconferences.wellcomeconnectingscience.org
January 14, 2026 at 10:39 AM
Reposted by Javier F Favieres
target-amr.bsky.social
🚨 Registration is now OPEN!
🎉Join us for the TARGetAMR Annual Conference 2026 on Thursday 14 & Friday 15 May at The Studio, Birmingham
🦠Connect, collaborate & tackle antimicrobial resistance
✨Secure your spot today!
👉 Register now: www.targetamr.org.uk/hdrevents/ta...
#TARGetAMR26
December 5, 2025 at 4:31 PM
Reposted by Javier F Favieres
torstenseemann.bsky.social
💾 ABRicate 1.2.0 has been released!

This 'oversight' lasted 6 years, but with help from @finlaym.bsky.social we got CI working and updated all the databases. #bioconda #conda #bioinformatics #microbiology #genomics

github.com/tseemann/abr...
Releases · tseemann/abricate
:mag_right: :pill: Mass screening of contigs for antimicrobial and virulence genes - tseemann/abricate
github.com
December 5, 2025 at 11:27 PM
Reposted by Javier F Favieres
target-amr.bsky.social
🧬Join us for the next TARGetAMR webinar!
💊Dangerous Miracle: A Brief History of Antibiotics
🗓️Wednesday 19 November🕐 1–2pm 💻 Online
🎙️With Liam Shaw, Computational Biologist at University of Bristol
🔗Register now! www.targetamr.org.uk/hdrevents/ta...
November 3, 2025 at 11:04 AM
Reposted by Javier F Favieres
baym.lol
What was antibiotic resistance like before we ever used antibiotics? How did we change what antibiotic resistance genes looked like over 100 years?

Our paper looking at resistance genes from a century of NCTC historical isolates now out in mGen:
www.microbiologyresearch.org/content/jour...
Genomic resistance in historical clinical isolates increased in frequency and mobility after the age of antibiotics
Antibiotic resistance is frequently observed shortly after the clinical introduction of an antibiotic. Whether and how frequently that resistance occurred before the introduction is harder to determin...
www.microbiologyresearch.org
September 1, 2025 at 5:49 PM
Reposted by Javier F Favieres
bananabenana.bsky.social
New preprint where we analysed IS loads in 🦠 #Klebsiella pneumoniae lineages and found they're inversely associated with nutrient usage. We propose an insertional tolerance model, whereby IS can only insert into metabolically-tolerable sites.

#IDSky #MicroSky 🧪

www.biorxiv.org/content/10.1...
Graph showing IS loads by Klebsiella sub-lineage
July 29, 2025 at 2:29 AM
Reposted by Javier F Favieres
bananabenana.bsky.social
Found some great ones:
www.bmj.com/content/bmj-...
BMJ visual abstracts
To help our readers to get a quick overview of research we publish, we started making visual abstracts (also known as "graphical abstracts") in March 2018. These small images give a summary of selecte...
www.bmj.com
June 19, 2025 at 1:34 PM
Reposted by Javier F Favieres
martinadalbello.bsky.social
📢 We're seeking a postdoc to work on a project funded by HFSP @hfspo.bsky.social at the intersection of bacterial physiology, ecology and evolution. You can find more details about the project, the position, and how to apply here www.dalbellolab.com/hfsp-project! #bacteria #ecosky #MevoSky #microSky
HFSP project — dal bello lab
www.dalbellolab.com
July 23, 2025 at 6:41 PM
Reposted by Javier F Favieres
adamjkucharski.bsky.social
Two PhD studentships available in real-time infectious disease modelling, jointly with LSHTM, Imperial and UKHSA. January 2026 start + 3.5 years of funding: www.lshtm.ac.uk/study/fees-a...
PhD studentships in real-time infectious disease modelling | LSHTM
The London School of Hygiene & Tropical Medicine (LSHTM), Imperial College London and the UK Health Security Agency (UKHSA) are pleased to invite applications for two PhD studentships in real-time
www.lshtm.ac.uk
July 24, 2025 at 12:33 PM
Reposted by Javier F Favieres
gpollara.bsky.social
Citrobacter freundii ain't ever been a friend of ours... now becoming even more hostile!
#IDSky #ClinMicro #AMR #MedSky
@lancetmicrobe.bsky.social

www.thelancet.com/journals/lan...
Global emergence and transmission dynamics of carbapenemase-producing Citrobacter freundii sequence type 22 high-risk international clone: a retrospective, genomic, epidemiological study
Our study provides evidence to suggest that Citrobacter species are emerging carriers of carbapenem-resistance genes. These findings provide insight into the population structure of CPC species and hi...
www.thelancet.com
July 21, 2025 at 7:57 AM
Reposted by Javier F Favieres
eventswcs.bsky.social
Participate at our global conference on Antimicrobial Resistance🧬

🗓️ 23-25 March 2026 #AMR2026

Join a community at the vanguard of #AMR genomics, to explore how big data and innovative technologies are driving solutions to tackle this health crisis.

📎Abstracts welcome: bit.ly/3SWzJUm
#MicroSky
Wellcome Connecting Science hybrid conference Antimicrobial Resistance – Genomes, Big Data and Emerging Technologies Conference dates: 23–25 March 2026 Location: Hinxton Hall Conference Centre, Wellcome Genome Campus, UK and online Bursary deadline: 01 December 2025 Abstract deadline: 15 December 2025 Registration deadlines: In person: 24 February 2026 | Virtual: 17 March 2026
July 22, 2025 at 7:00 AM
Reposted by Javier F Favieres
cserna.bsky.social
Our paper “Global dissemination of npmA mediated pan‑aminoglycoside resistance via a mobile element in Gram‑positive bacteria” is now in @natcomms.nature.com. Part of my freshly defended PhD, so doubly happy! 😄🎉

🧵 (1/14)

www.doi.org/10.1038/s414...
Global dissemination of npmA mediated pan-aminoglycoside resistance via a mobile genetic element in Gram-positive bacteria - Nature Communications
The authors investigate the distribution of the aminoglycoside resistance gene npmA in Gram-positive bacteria via a mobile genetic element, highlighting its global presence and cross-species transfer ...
www.doi.org
July 17, 2025 at 12:13 PM