James Manton
jamesdmanton.bsky.social
James Manton
@jamesdmanton.bsky.social
Applied physicist & microscopist/microscopologist
Thanks to a dose of activation energy from @dpshepherd.bsky.social, I've finally cleaned up my Biggs–Andrews accelerated version of our automatic parameter-free deconvolution code and made it available at beryl.mrc-lmb.cam.ac.uk/rlgcba_noteb.... This is ~2.75× faster than the previous version.

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May 9, 2025 at 7:08 PM
Thanks to some CUDA trickery*, our automatic parameter-free deconvolution code is now ~3× faster than the previous version (~9× faster than the original) while still producing exactly the same results as before.

Try it out for free using Google Colab at beryl.mrc-lmb.cam.ac.uk/rlgc_notebook/

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May 6, 2025 at 7:35 PM
Our automatic parameter-free deconvolution code is now 2–3× faster while still producing exactly the same results as before. If you want to try it out, we have a Google Notebook implementation available at beryl.mrc-lmb.cam.ac.uk/rlgc_notebook/. Manuscript WIP.
January 22, 2025 at 10:45 AM
We've recently updated our multispectral microscopy manuscript to clarify a few points (particularly regarding SNR) and add eight supplementary figures. Courtesy of Sjoerd Stallinga, we now also have a derivation of the appropriate Cramér–Rao lower bound!

www.biorxiv.org/content/10.1...
November 27, 2024 at 6:11 PM