Igor Martayan
@imartayan.bsky.social
PhD student in algorithmic bioinformatics at @bonsaiseqbioinfo.bsky.social.
Interested in randomized algorithms and space-efficient data structures
https://igor.martayan.org
Interested in randomized algorithms and space-efficient data structures
https://igor.martayan.org
The last speaker is Liang Hong on the detection of protein homologs using deep dense retrieval.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
April 27, 2025 at 3:13 AM
The last speaker is Liang Hong on the detection of protein homologs using deep dense retrieval.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Time for the highlight talks starting with Kunhyung Bahk on SigAlign, an alignment algorithm guided by explicit similarity criteria.
academic.oup.com/nar/article/...
academic.oup.com/nar/article/...
April 27, 2025 at 3:01 AM
Time for the highlight talks starting with Kunhyung Bahk on SigAlign, an alignment algorithm guided by explicit similarity criteria.
academic.oup.com/nar/article/...
academic.oup.com/nar/article/...
Now Adam Park from @david-koslicki.bsky.social's group introduces Prokrustean graphs, a new approach for size-agnostic k-mer analysis.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
April 27, 2025 at 2:38 AM
Now Adam Park from @david-koslicki.bsky.social's group introduces Prokrustean graphs, a new approach for size-agnostic k-mer analysis.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Ghanshyam Chandra is now presenting a new alignment-free genotyping framework for pangenomes.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
April 27, 2025 at 2:20 AM
Ghanshyam Chandra is now presenting a new alignment-free genotyping framework for pangenomes.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Next up is Nathaniel Brown from @benlangmead.bsky.social's group presenting col-bwt, a new algorithm for computing chain statistics using multi-maximal unique matches.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
April 27, 2025 at 2:00 AM
Next up is Nathaniel Brown from @benlangmead.bsky.social's group presenting col-bwt, a new algorithm for computing chain statistics using multi-maximal unique matches.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
The sequence analysis session of #RECOMB2025 is off to a great start with @jimshaw.bsky.social presenting devider, a new algorithm for haplotyping small sequences from long-read sequencing.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
April 27, 2025 at 1:27 AM
The sequence analysis session of #RECOMB2025 is off to a great start with @jimshaw.bsky.social presenting devider, a new algorithm for haplotyping small sequences from long-read sequencing.
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
I'll be presenting our work on hyper-k-mers at #RECOMB today at 10:40 KST!
You can get a sneak peek at the slides here: igor.martayan.org/slides-recom...
Come say hi if you'd like to chat, or just get one of these cute stickers!
You can get a sneak peek at the slides here: igor.martayan.org/slides-recom...
Come say hi if you'd like to chat, or just get one of these cute stickers!
April 26, 2025 at 10:23 PM
I'll be presenting our work on hyper-k-mers at #RECOMB today at 10:40 KST!
You can get a sneak peek at the slides here: igor.martayan.org/slides-recom...
Come say hi if you'd like to chat, or just get one of these cute stickers!
You can get a sneak peek at the slides here: igor.martayan.org/slides-recom...
Come say hi if you'd like to chat, or just get one of these cute stickers!
@camillemrcht.bsky.social is back on stage to present Vizitig, an interactive visualization tool for sequencing datasets developped by @bdegardins.bsky.social
April 25, 2025 at 5:45 AM
@camillemrcht.bsky.social is back on stage to present Vizitig, an interactive visualization tool for sequencing datasets developped by @bdegardins.bsky.social
This time, @camillemrcht.bsky.social is on the other side of the stage to present the next version of REINDEER, a scalable index for k-mer abundances
April 25, 2025 at 5:03 AM
This time, @camillemrcht.bsky.social is on the other side of the stage to present the next version of REINDEER, a scalable index for k-mer abundances
The main idea of our approach is to stream multiple chunks of the sequence to process them in parallel, coupled with a nearly branchless algorithm to compute sliding window minima, fully implemented using SIMD instructions.
January 29, 2025 at 11:20 AM
The main idea of our approach is to stream multiple chunks of the sequence to process them in parallel, coupled with a nearly branchless algorithm to compute sliding window minima, fully implemented using SIMD instructions.