Harikrishnan Ramadasan
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harirmds.bsky.social
Harikrishnan Ramadasan
@harirmds.bsky.social
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PhD @CompOmics.com
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Reposted by Harikrishnan Ramadasan
compomics.com
From PTMs to proteins, from metadata to metaproteomics. CompOmics has got you covered at #EuPA2025!
Plenary talk Lennart Martens Rise of the Robots – definitely artificial, somewhat intelligent Keynote lecture Tim Van Den Bossche Improving metaproteomics data analysis with the Ghent Metaproteomics Toolbox Oral presentations Harikrishnan Ramadasan Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0 Robbe Devreese Collisional cross-section prediction for peptides and small molecules: covering all bases (and bridging the gap?) Robbin Bouwmeester Challenges and opportunities in modification searches for DIA proteomics Educational session Lennart Martens No more surprises: AI predictions in MS DDA and DIA data interpretation Robbin Bouwmeester A deep dive into limitations of modification searching for DIA data Caroline Jachmann Fantastic PTMs and how (not?) to find them using msqrob2PTM - a real-life journey Poster presentations Enrico Massignani Overcoming challenges in non-canonical protein searches with OpenProt and ionbot Pathmanaban Ramasamy Assessing the relation between protein phosphorylation, AlphaFold3 models and conformational variability Toon Callens Advancing tissue prediction using read-based DNA methylation modelling towards a multi-omics integration Tine Claeys MLMarker: Data-driven discovery of tissue similarity and biomarkers Alireza Nameni Enhancing peptide-spectrum match identification with non-linear models in Mokapot: Assessing complexity, overfitting, and false discovery rates Tim Van Den Bossche The Metaproteomics Initiative: An international community by and for metaproteomics researchers Award presentations Tine Claeys Bioinformatics Award Tim Van Den Bossche Vision & Commitment Award
June 16, 2025 at 8:05 AM
Reposted by Harikrishnan Ramadasan
tineclaeys.bsky.social
We are working on an AI based metadata extraction pipeline from papers, supplementary files and mass spectra. Come to @harirmds.bsky.social's talk at #EuPA2025 for the newest and hottest results!
eubic-ms.org EuBIC-MS @eubic-ms.org · Jun 13
Join us in Saint-Malo for the #EuBIC-MS session at #EuPA2025!
After a short introduction, we have three exciting talks lined up, as well as an interactive discussion on open issues in computational proteomics.

@eupaproteomics.bsky.social @uszkoreitju.bsky.social @harirmds.bsky.social
EuBIC-MS session at EuPA 2025 Tuesday June 17, 10:15 - 12:00, Room Vauban 1 Ralf Gabriels Introducing EuBIC-MS 10:15 - 10:30 Julian Uszkoreit O85 - What can we gain - a comparison of common search engines and post-processing methods 10:30 - 10:45 Yannic Chen O84 - Benchmarking Database Search Engines for DDA-based Immunopeptidomics 10:45 - 11:00 Harikrishnan Ramadasan O86 - Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0 11:00 - 11:15 Interactive discussions on open challenges in computational proteomics 11:15 - 12:00
June 13, 2025 at 9:47 PM
Reposted by Harikrishnan Ramadasan
eubic-ms.org
Join us in Saint-Malo for the #EuBIC-MS session at #EuPA2025!
After a short introduction, we have three exciting talks lined up, as well as an interactive discussion on open issues in computational proteomics.

@eupaproteomics.bsky.social @uszkoreitju.bsky.social @harirmds.bsky.social
EuBIC-MS session at EuPA 2025 Tuesday June 17, 10:15 - 12:00, Room Vauban 1 Ralf Gabriels Introducing EuBIC-MS 10:15 - 10:30 Julian Uszkoreit O85 - What can we gain - a comparison of common search engines and post-processing methods 10:30 - 10:45 Yannic Chen O84 - Benchmarking Database Search Engines for DDA-based Immunopeptidomics 10:45 - 11:00 Harikrishnan Ramadasan O86 - Bridging expert curation and LLMs for automated metadata extraction in lesSDRF 2.0 11:00 - 11:15 Interactive discussions on open challenges in computational proteomics 11:15 - 12:00
June 13, 2025 at 1:56 PM
Reposted by Harikrishnan Ramadasan
magnuspalmblad.bsky.social
Wonderful and productive @eubic-ms.org Developers' Meeting in Neustift, South Tyrol, hacking proteomics and metabolomics software and metadata standards for five days!
February 10, 2025 at 9:56 AM
Reposted by Harikrishnan Ramadasan
tineclaeys.bsky.social
The @eubic-ms.org Dev Meeting was amazing! We explored how to automatically extract metadata. I'm super excited to continue this effort 🤗 A huge thanks to the incredible team of this hackathon 🙏
#EuBIC2025
February 7, 2025 at 10:22 AM