Graham Erwin
@grahamerwin.bsky.social
Asst. Professor, Baylor College of Medicine. Previously Stanford and UW–Madison. We use molecules and genomes to understand repetitive DNA sequences. #FirstGenAcademic ErwinLab.org
Come check out Cera’s poster (4106) today at 2:30pm! Pre-print: www.medrxiv.org/content/10.1...
Whole-genome variant detection in long-read sequencing data from ultra-low input patient samples
Long-read sequencing provides a more complete view of the genome than short-read sequencing, with advantages in the detection of structural variants, tandem repeats, and small variants (single nucleot...
www.medrxiv.org
October 17, 2025 at 5:23 PM
Come check out Cera’s poster (4106) today at 2:30pm! Pre-print: www.medrxiv.org/content/10.1...
Just trying to follow in your footsteps, Kara!
October 9, 2025 at 2:56 PM
Just trying to follow in your footsteps, Kara!
Absolutely!! Thanks David :)
October 9, 2025 at 2:55 PM
Absolutely!! Thanks David :)
Here is the output in case there are issues with the link.
Prompt: Do research. find peer-reviewed publications of pyrrole-imidazole polyamides used to activate gene expression (transcriptional activators). Expected output: an exhaustive list of references to the original publication.
Prompt: Do research. find peer-reviewed publications of pyrrole-imidazole polyamides used to activate gene expression (transcriptional activators). Expected output: an exhaustive list of references to the original publication.
April 16, 2025 at 9:23 PM
Here is the output in case there are issues with the link.
Prompt: Do research. find peer-reviewed publications of pyrrole-imidazole polyamides used to activate gene expression (transcriptional activators). Expected output: an exhaustive list of references to the original publication.
Prompt: Do research. find peer-reviewed publications of pyrrole-imidazole polyamides used to activate gene expression (transcriptional activators). Expected output: an exhaustive list of references to the original publication.
The only tool to capture both so far has been ChatGPT Deep Research and o3 (new model from OpenAI released today. It also captures 2 other important papers from Sugiyama and Kodadek. (3/3)
bit.ly/LLMtaste
bit.ly/LLMtaste
ChatGPT
A conversational AI system that listens, learns, and challenges
bit.ly
April 16, 2025 at 9:21 PM
The only tool to capture both so far has been ChatGPT Deep Research and o3 (new model from OpenAI released today. It also captures 2 other important papers from Sugiyama and Kodadek. (3/3)
bit.ly/LLMtaste
bit.ly/LLMtaste
The two more important papers on polyamide-based transcriptional activators would be Mapp et al PNAS 2000 (the OG on the topic) and our 2017 Science paper (one of the most convincing in a disease model). (2/3)
ChatGPT
A conversational AI system that listens, learns, and challenges
chatgpt.com
April 16, 2025 at 9:21 PM
The two more important papers on polyamide-based transcriptional activators would be Mapp et al PNAS 2000 (the OG on the topic) and our 2017 Science paper (one of the most convincing in a disease model). (2/3)
Caveat: The authors didn't perform a statistical test comparing these groups, but the trend is the same on bot top-1 and top-10 accuracy.
April 11, 2025 at 8:54 PM
Caveat: The authors didn't perform a statistical test comparing these groups, but the trend is the same on bot top-1 and top-10 accuracy.
Yes! Benchmarks aside, 3.7 Sonnet and Gemini 2.5 Pro have been performing well for me.
April 7, 2025 at 9:15 PM
Yes! Benchmarks aside, 3.7 Sonnet and Gemini 2.5 Pro have been performing well for me.
Congratulations, Harriet. This will be a valuable resource for us!
March 26, 2025 at 9:48 PM
Congratulations, Harriet. This will be a valuable resource for us!