Gennady Gorin
goringennady.bsky.social
Gennady Gorin
@goringennady.bsky.social
🦠🧬📊bioinformatics, statistics, and stochastic processes.
Default MS Excel charts in every other figure, terrific stuff
November 28, 2025 at 5:39 AM
You might expect this means the peer review didn't work, which is completely true, but this figure is technically better than the preprint version
November 28, 2025 at 5:36 AM
The Medical Detectives by Roueché?
November 25, 2025 at 2:00 AM
The legal services point is particularly great a week after www.nytimes.com/2025/11/07/b...
Vigilante Lawyers Expose the Rising Tide of A.I. Slop in Court Filings
www.nytimes.com
November 15, 2025 at 4:16 AM
It is, for whatever it's worth, interesting to read through the notebooks and really understand the gaps. But when the summary plainly says n=7 but every analysis assumes n=1000, the whole thing is a bit rough to get off the ground.
November 7, 2025 at 3:19 AM
Those are some very small p-values for the single-cell data 🙃
November 6, 2025 at 5:20 PM
Yes, the behavior of the overall vector magnitude, as well as the component magnitudes, are not very well-behaved. Not quite sure I understand what you mean here though.
November 6, 2025 at 3:42 AM
Not necessarily that specific one, but something that combines stationarity + overdispersion, and cell type mixture models are a natural candidate. A null hypothesis is not very well-defined here but it would be helpful to know if this falls prey to the same pitfalls as the original 2018 software.
November 6, 2025 at 3:42 AM
Very exciting work! If you don't mind me asking— what are the environments required by the disclosed RDS files? They throw errors and cannot be opened in R.
November 4, 2025 at 6:00 PM
Yes, exactly. This is a very common theme in the performance of velocity benchmarks: every new paper has to treat the original papers as ground truth, so performance on their datasets is stable
November 4, 2025 at 4:36 PM
Yes, the problem there is of course they're all suboptimal (and can be arbitrarily bad) by Johnson–Lindenstrauss, and neighborhoods + global structure get scrambled pretty badly. This is a generalization problem again— assuming that paper results are ~ok & user input is ~perfect.
November 4, 2025 at 4:30 PM
Though if the distribution is nonuniform under a fully controlled null, that is a bit strange.
November 4, 2025 at 4:09 PM
I would appreciate it. There are many ways to define a null hypothesis here, and it would be great to see whether a typical false positive (nondynamic simulation that produces velocity arrows) can be spotted by such a procedure.
November 4, 2025 at 4:06 PM