What’s next? Happy to take requests for new databases or features. Let me know what would make TaxSEA more useful for your work. I’m also putting together workshop materials & tutorials, so stay tuned if you’d like to learn how to use TaxSEA in your own microbiome analyses.
November 3, 2025 at 12:27 AM
What’s next? Happy to take requests for new databases or features. Let me know what would make TaxSEA more useful for your work. I’m also putting together workshop materials & tutorials, so stay tuned if you’d like to learn how to use TaxSEA in your own microbiome analyses.
Automated BugSigDB integration. TaxSEA now talks more directly to the BugSigDB API and returns a table of PubMed IDs for microbiome signatures most similar to your results, instantly linking your findings to published studies.
November 3, 2025 at 12:27 AM
Automated BugSigDB integration. TaxSEA now talks more directly to the BugSigDB API and returns a table of PubMed IDs for microbiome signatures most similar to your results, instantly linking your findings to published studies.
New curated signature collections from the literature added: • Urbanisation-associated microbiomes • Mucin utilisation • Gut–brain axis relevant taxa All available as built-in gene sets for enrichment testing.
November 3, 2025 at 12:27 AM
New curated signature collections from the literature added: • Urbanisation-associated microbiomes • Mucin utilisation • Gut–brain axis relevant taxa All available as built-in gene sets for enrichment testing.
TaxSEA now integrates data from BacDive, the Bacterial Diversity Metadatabase, which contains curated phenotypic + metabolic traits for thousands of bacteria. You can test whether your metagenome is enriched for taxa with traits like nitrate reduction, enzyme production etc.
November 3, 2025 at 12:27 AM
TaxSEA now integrates data from BacDive, the Bacterial Diversity Metadatabase, which contains curated phenotypic + metabolic traits for thousands of bacteria. You can test whether your metagenome is enriched for taxa with traits like nitrate reduction, enzyme production etc.