Estella Yixing Dong
@estellayixingdong.bsky.social
R advocate #rstats | PhD @CHUVLausanne @unil | Immunology, Immunotherapy, Single-Cell RNAseq, Spatial Transcriptomics, Statistics and Machine Learning. 📷⛸️🏔️
Reposted by Estella Yixing Dong
Many people hours, calls and messages later: OSTA is now “in (pre)print”, though the real thing lives at bioconductor.org/books/OSTA.
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
November 21, 2025 at 5:31 PM
Many people hours, calls and messages later: OSTA is now “in (pre)print”, though the real thing lives at bioconductor.org/books/OSTA.
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
Check it out, get in touch. We welcome any feedback, suggestions, wishes (& contributions).
It’s been a joy working with you @estellayixingdong.bsky.social!
Reposted by Estella Yixing Dong
Orchestrating Spatial Transcriptomics Analysis with Bioconductor https://www.biorxiv.org/content/10.1101/2025.11.20.688607v1
November 21, 2025 at 2:46 PM
Orchestrating Spatial Transcriptomics Analysis with Bioconductor https://www.biorxiv.org/content/10.1101/2025.11.20.688607v1
Reposted by Estella Yixing Dong
🎉 New paper alert. We benchmarked Visium, GeoMx, and Chromium for FFPE tumor analysis. Thanks @estellayixingdong.bsky.social for pushing this forward, & MOSAIC collaborators!
📄 www.nature.com/articles/s41...
#SpatialTranscriptomics #CancerResearch cc: @owkin.bsky.social @10xgenomics.bsky.social
📄 www.nature.com/articles/s41...
#SpatialTranscriptomics #CancerResearch cc: @owkin.bsky.social @10xgenomics.bsky.social
Transcriptome analysis of archived tumors by Visium, GeoMx DSP, and Chromium reveals patient heterogeneity - Nature Communications
Currently, there is an urgent need to evaluate the strengths and limitations of various probe-based full transcriptome methods for formalin-fixed paraffin-embedded tumor tissues. Here, the authors ana...
www.nature.com
June 22, 2025 at 6:20 AM
🎉 New paper alert. We benchmarked Visium, GeoMx, and Chromium for FFPE tumor analysis. Thanks @estellayixingdong.bsky.social for pushing this forward, & MOSAIC collaborators!
📄 www.nature.com/articles/s41...
#SpatialTranscriptomics #CancerResearch cc: @owkin.bsky.social @10xgenomics.bsky.social
📄 www.nature.com/articles/s41...
#SpatialTranscriptomics #CancerResearch cc: @owkin.bsky.social @10xgenomics.bsky.social
Reposted by Estella Yixing Dong
@helucro.bsky.social @estellayixingdong.bsky.social @kevinyamauchi.bsky.social @arturmansl.bsky.social Dario Righelli, Louise Deconick, Vincent Carey
Should you use R (Bioconductor) or Python (scverse) for spatial omics? Ideally, you won’t have to choose one. We are working toward making...
Should you use R (Bioconductor) or Python (scverse) for spatial omics? Ideally, you won’t have to choose one. We are working toward making...
January 20, 2025 at 5:29 PM
@helucro.bsky.social @estellayixingdong.bsky.social @kevinyamauchi.bsky.social @arturmansl.bsky.social Dario Righelli, Louise Deconick, Vincent Carey
Should you use R (Bioconductor) or Python (scverse) for spatial omics? Ideally, you won’t have to choose one. We are working toward making...
Should you use R (Bioconductor) or Python (scverse) for spatial omics? Ideally, you won’t have to choose one. We are working toward making...