Emili Collaboratory for Network, Systems & Spatial Biology
@e-cns2b.bsky.social
OHSU Knight Cancer Institute
emililab.org
emililab.org
This week, we welcome Dr. Yogesh Joglekar! to the Emili Laboratory Team. Dr. Joglekar is a theoretical physicist's that is interested in systems biology. Cross-talk between different fields is critical for scientific advancement, and that is what we strive to achieve as we learn from each other.
January 28, 2026 at 7:42 PM
This week, we welcome Dr. Yogesh Joglekar! to the Emili Laboratory Team. Dr. Joglekar is a theoretical physicist's that is interested in systems biology. Cross-talk between different fields is critical for scientific advancement, and that is what we strive to achieve as we learn from each other.
Dr. Emili gave a powerful talk on mechanism focused AI-enhanced multi-modal analysis for early cancer interception at BC Cancer in Vancouver BC. Leveraging AI to advance scientific and medical research.
January 22, 2026 at 12:21 AM
Dr. Emili gave a powerful talk on mechanism focused AI-enhanced multi-modal analysis for early cancer interception at BC Cancer in Vancouver BC. Leveraging AI to advance scientific and medical research.
🗞️New Tool: OmNI. To streamline multi-omic data integration, visualization, and analysis!
OmNI is free! to use. We made this tool to lower computational barriers and accelerate the discovery of meaningful biological insights.
Use this link to check out the publication and learn about this tool:
OmNI is free! to use. We made this tool to lower computational barriers and accelerate the discovery of meaningful biological insights.
Use this link to check out the publication and learn about this tool:
OmNI: a modular open-source framework for interactive multi-omics data integration and visualization
Abstract. Omics Notebook Interactive (OmNI) is an R-based, open-source, and modular framework engineered for streamlined multi-omics data integration and a
academic.oup.com
January 12, 2026 at 6:20 PM
🗞️New Tool: OmNI. To streamline multi-omic data integration, visualization, and analysis!
OmNI is free! to use. We made this tool to lower computational barriers and accelerate the discovery of meaningful biological insights.
Use this link to check out the publication and learn about this tool:
OmNI is free! to use. We made this tool to lower computational barriers and accelerate the discovery of meaningful biological insights.
Use this link to check out the publication and learn about this tool:
Reposted by Emili Collaboratory for Network, Systems & Spatial Biology
What can the Brain Knowledge Platform do for you? 🧠📈
Join us on Jan. 14, 11am-12pm PT for a webinar on the new features and data in world's most comprehensive brain cell atlas.
🔗 https://alleninstitute-org.zoom.us/webinar/register/WN_Le5E4CXGSA2clMJ2VesyBw#/registration
Join us on Jan. 14, 11am-12pm PT for a webinar on the new features and data in world's most comprehensive brain cell atlas.
🔗 https://alleninstitute-org.zoom.us/webinar/register/WN_Le5E4CXGSA2clMJ2VesyBw#/registration
January 5, 2026 at 9:14 PM
What can the Brain Knowledge Platform do for you? 🧠📈
Join us on Jan. 14, 11am-12pm PT for a webinar on the new features and data in world's most comprehensive brain cell atlas.
🔗 https://alleninstitute-org.zoom.us/webinar/register/WN_Le5E4CXGSA2clMJ2VesyBw#/registration
Join us on Jan. 14, 11am-12pm PT for a webinar on the new features and data in world's most comprehensive brain cell atlas.
🔗 https://alleninstitute-org.zoom.us/webinar/register/WN_Le5E4CXGSA2clMJ2VesyBw#/registration
Reposted by Emili Collaboratory for Network, Systems & Spatial Biology
"Having a blood test that detects a signal for a cancer in somebody with no symptoms and then seeing it confirmed on imaging? It’s a game-changer. It’s completely revolutionary."
- Dr. Nima Nabavizadeh on the PATHFINDER 2 study, the largest multi-cancer early detection trial in North America
- Dr. Nima Nabavizadeh on the PATHFINDER 2 study, the largest multi-cancer early detection trial in North America
January 5, 2026 at 5:16 PM
"Having a blood test that detects a signal for a cancer in somebody with no symptoms and then seeing it confirmed on imaging? It’s a game-changer. It’s completely revolutionary."
- Dr. Nima Nabavizadeh on the PATHFINDER 2 study, the largest multi-cancer early detection trial in North America
- Dr. Nima Nabavizadeh on the PATHFINDER 2 study, the largest multi-cancer early detection trial in North America
We had a delicious feast at the Emili Lab End-of-Year Potluck. Relaxing music and great company.
December 16, 2025 at 9:51 PM
We had a delicious feast at the Emili Lab End-of-Year Potluck. Relaxing music and great company.
We are exited to share our latest publication in Cell Chemical Biology authors.elsevier.com/c/1mFMe8jWWJ...
Thank you to Dr.Avik Basu and our colleagues for all you hard work. This work highlights the discoveries that can be made by identifying dynamic protein interactions at synapses.
Thank you to Dr.Avik Basu and our colleagues for all you hard work. This work highlights the discoveries that can be made by identifying dynamic protein interactions at synapses.
December 10, 2025 at 6:22 PM
We are exited to share our latest publication in Cell Chemical Biology authors.elsevier.com/c/1mFMe8jWWJ...
Thank you to Dr.Avik Basu and our colleagues for all you hard work. This work highlights the discoveries that can be made by identifying dynamic protein interactions at synapses.
Thank you to Dr.Avik Basu and our colleagues for all you hard work. This work highlights the discoveries that can be made by identifying dynamic protein interactions at synapses.
Congratulations to Dr. Indranil Paul, Grace Potter, and the rest of the team!! for their collaborative effort on this manuscript that was recently accepted "OmNI: A Modular Open-Source Framework for Interactive Multi-Omics Data Integration and Visualization". A tool to integrate Multi-Omic data.
November 25, 2025 at 9:23 PM
Congratulations to Dr. Indranil Paul, Grace Potter, and the rest of the team!! for their collaborative effort on this manuscript that was recently accepted "OmNI: A Modular Open-Source Framework for Interactive Multi-Omics Data Integration and Visualization". A tool to integrate Multi-Omic data.
Congratulations to Dr. Avik Basu and the rest of the team!! Their recent paper on Photo-proximity labeling in live primary neurons has been accepted! Details to follow...
November 25, 2025 at 9:15 PM
Congratulations to Dr. Avik Basu and the rest of the team!! Their recent paper on Photo-proximity labeling in live primary neurons has been accepted! Details to follow...
A lot of awesome AI Research here at OHSU, topics include: clinical decision making, imaging, and population health. Learning a lot at the OHSU AI Research Summit 2025.
November 21, 2025 at 11:13 PM
A lot of awesome AI Research here at OHSU, topics include: clinical decision making, imaging, and population health. Learning a lot at the OHSU AI Research Summit 2025.
Dr. Emili gave a visionary presentation today at the OHSU Quantitative and Systems Biology: Visions for Systems Biology Seminar. Excellent talks from the other Faculty at OHSU: Drs. Andrew Adey, Kyle Ellrott, and Gregory Baker.
October 29, 2025 at 11:04 PM
Dr. Emili gave a visionary presentation today at the OHSU Quantitative and Systems Biology: Visions for Systems Biology Seminar. Excellent talks from the other Faculty at OHSU: Drs. Andrew Adey, Kyle Ellrott, and Gregory Baker.
This week, we welcomed Hiba Midouane to the Emili Lab at OHSU. She will be joining us to continue her research on neurodegenerative diseases. Hiba will learn and apply cutting edge proteomics tools to her research. We look forward to what Hiba will accomplish in her 1 year with the Emili Lab.
October 23, 2025 at 6:53 PM
This week, we welcomed Hiba Midouane to the Emili Lab at OHSU. She will be joining us to continue her research on neurodegenerative diseases. Hiba will learn and apply cutting edge proteomics tools to her research. We look forward to what Hiba will accomplish in her 1 year with the Emili Lab.
Drs. Emili and Paul are attending the "Early Detection of Cancer Conference" here in Portland, OR. Dr. Paul will be presenting a poster on the Emili Lab's latest ongoing efforts on the early detection of cancer, very fitting.
October 21, 2025 at 5:14 PM
Drs. Emili and Paul are attending the "Early Detection of Cancer Conference" here in Portland, OR. Dr. Paul will be presenting a poster on the Emili Lab's latest ongoing efforts on the early detection of cancer, very fitting.
The Emili Lab enjoyed a nice sunny morning at The Pumpkin Patch. We completed the Maize and had some muddy shoes at the end.
October 13, 2025 at 10:12 PM
The Emili Lab enjoyed a nice sunny morning at The Pumpkin Patch. We completed the Maize and had some muddy shoes at the end.
Dr. Emili gave a powerful talk at the Structural Proteomics Symposium 2025 in Milan on advancing the scientific toolkit to address molecular interactome questions. He ended his presentation by encouraging us to pioneer new technologies and tools.
October 7, 2025 at 5:21 PM
Dr. Emili gave a powerful talk at the Structural Proteomics Symposium 2025 in Milan on advancing the scientific toolkit to address molecular interactome questions. He ended his presentation by encouraging us to pioneer new technologies and tools.
Neha has completed her final Thesis Advisory Committee and will be working to wrap up her research. We enjoyed a nice Lab lunch get together to celebrate her time in the Emili Lab. We all wish Neha success as she works to finish her project and moves forward in her career.
October 2, 2025 at 10:29 PM
Neha has completed her final Thesis Advisory Committee and will be working to wrap up her research. We enjoyed a nice Lab lunch get together to celebrate her time in the Emili Lab. We all wish Neha success as she works to finish her project and moves forward in her career.
Great Job Neha Somalwar! for your great talk at the BME Student Seminar! Neha is a joint student in the Emili and Nan Laboratories.
September 12, 2025 at 8:09 PM
Great Job Neha Somalwar! for your great talk at the BME Student Seminar! Neha is a joint student in the Emili and Nan Laboratories.
Congratulations to new BME PhD graduate Brian Karlberg for successfully defending! Title: Cancer Molecular Subtyping: A Machine Learning Approach.
Congrats Dr. Karlberg!
Congrats Dr. Karlberg!
September 12, 2025 at 4:07 PM
Congratulations to new BME PhD graduate Brian Karlberg for successfully defending! Title: Cancer Molecular Subtyping: A Machine Learning Approach.
Congrats Dr. Karlberg!
Congrats Dr. Karlberg!
Colin, our B-BRITE Intern finished his summer internship in the Emili Lab. He gave a great poster presentation at the OHSU Summer Intern Poster Session. We wish him the best as he goes on to finish his undergrad education.
August 19, 2025 at 11:02 PM
Colin, our B-BRITE Intern finished his summer internship in the Emili Lab. He gave a great poster presentation at the OHSU Summer Intern Poster Session. We wish him the best as he goes on to finish his undergrad education.
BIG NEWS here at OHSU Knight Cancer Institute!
Phil and Penny Knight Donate $2 billion:
news.ohsu.edu/2025/08/14/o...
See the recording here: www.youtube.com/live/BYRbut4...
Phil and Penny Knight Donate $2 billion:
news.ohsu.edu/2025/08/14/o...
See the recording here: www.youtube.com/live/BYRbut4...
OHSU Knight Cancer Institute receives record $2 billion commitment from Phil and Penny Knight
The largest single donation ever made to a U.S. university, college or academic health center will transform cancer care.
news.ohsu.edu
August 14, 2025 at 7:01 PM
BIG NEWS here at OHSU Knight Cancer Institute!
Phil and Penny Knight Donate $2 billion:
news.ohsu.edu/2025/08/14/o...
See the recording here: www.youtube.com/live/BYRbut4...
Phil and Penny Knight Donate $2 billion:
news.ohsu.edu/2025/08/14/o...
See the recording here: www.youtube.com/live/BYRbut4...
A great Industry Outreach Workshop with Presenters Ms. Ronlov and Dr. Marchand. They gave valuable resources and insights to strategically reach out to industry.
Most importantly, they provided us with all the resources available to us here at OHSU.
Most importantly, they provided us with all the resources available to us here at OHSU.
August 13, 2025 at 11:23 PM
A great Industry Outreach Workshop with Presenters Ms. Ronlov and Dr. Marchand. They gave valuable resources and insights to strategically reach out to industry.
Most importantly, they provided us with all the resources available to us here at OHSU.
Most importantly, they provided us with all the resources available to us here at OHSU.
Andrew will be presenting at the upcoming 13th Symposium on Structural Proteomics!
July 25, 2025 at 3:56 PM
Andrew will be presenting at the upcoming 13th Symposium on Structural Proteomics!
The PREVAIL Team had a successful meeting presenting their project to NIH DCP and DCB representatives. As experts in their respective fields, their work will synergize to intercept cancer.
July 24, 2025 at 2:51 PM
The PREVAIL Team had a successful meeting presenting their project to NIH DCP and DCB representatives. As experts in their respective fields, their work will synergize to intercept cancer.
Saman and Nima both showcased their research at the Cascadia Proteomics Symposium. Saman presented a poster on his ongoing research in the Emili Lab.
July 21, 2025 at 3:45 PM
Saman and Nima both showcased their research at the Cascadia Proteomics Symposium. Saman presented a poster on his ongoing research in the Emili Lab.
PostDoc Nima Ranjbar Sistani in the Lab presented his ongoing research at the Cascadia Proteomics Symposium!
July 18, 2025 at 4:49 PM
PostDoc Nima Ranjbar Sistani in the Lab presented his ongoing research at the Cascadia Proteomics Symposium!