Alessandro De Simone
desimonelab.bsky.social
Alessandro De Simone
@desimonelab.bsky.social
Physical principles of regeneration in zebrafish. Assist. Prof. @Genevunige. Passionate of zebrafish scales, bone morphogenesis and signalling dynamics. #SciComm and Improv theatre. https://tinyurl.com/23str3yn
Ben! Thank you 😀 There is no day we are not grateful for your lines, protocols and discoveries!
November 21, 2025 at 9:56 AM
Thank you, Stefano! And thank you for your continuing support :)
November 21, 2025 at 9:42 AM
Thank you! I fully agree with you, this is an advantage of slow waves 😀
November 21, 2025 at 9:37 AM
Thank you so much!
November 21, 2025 at 9:35 AM
Special thanks to Prof. Franka Voigt for this great collaboration - without who this project would have not been possible. Btw, a collaboration born at #SY-STEM 2023 in Vienna quite serendipitously.
November 20, 2025 at 9:28 PM
Congratulations to Coline, Tristan, and all people involved, on this important step!
November 20, 2025 at 6:11 PM
This suggests a fascinating paradigm for the control of tissue regeneration: the more Erk waves sweep across the tissue, the more the tissue matures, potentially regulating future waves to tune overall growth.
November 20, 2025 at 6:11 PM
These results reveal a self-regulating and spatially organized signaling circuit in which Erk activity waves shape their own inhibition landscape as they propagate, while simultaneously driving tissue maturation.
November 20, 2025 at 6:11 PM
We continued our analysis by asking if Erk waves regulate other aspects of osteoblast regeneration. We discovered that Erk waves modulate the transcription of the bone maturation transcription factor osterix, which is activated in trailing transcriptional waves.
November 20, 2025 at 6:11 PM
ReLUs are classic processing units of neural networks and allow proportional responses to strong stimuli, while buffering noise.
November 20, 2025 at 6:11 PM
We found that the abundance of inhibitor transcripts depends on Erk activity through Rectified Linear Unit (ReLU) responses: transcript levels increase linearly with Erk activity once a threshold is crossed.
November 20, 2025 at 6:11 PM
To understand how refractory periods arise, we analyzed transcriptional patterns. Together with the Voigt lab at UZH, we developed an smFISH technique for whole-mount scales. This revealed that Erk waves induce beautiful trailing waves of the inhibitor transcripts dusp5, spry2, and spry4.
November 20, 2025 at 6:11 PM
We further noticed that, when two waves meet, they merge, which suggests that waves are followed by regions that are refractory to Erk activation. This refractory region is predicted to result from high concentrations of Erk inhibitors, induced by Erk itself.
November 20, 2025 at 6:11 PM
Erk waves were proposed to result from an excitable system including interactions with Erk activators and inhibitors. Compatibly with excitable Erk waves theory, we observed that Erk waves can form striking spiral patterns in scales.
November 20, 2025 at 6:11 PM
Erk inhibitors are predicted to tune wave frequency, which controls tissue growth.
November 20, 2025 at 6:11 PM
Thank you for advertising our work!
November 20, 2025 at 9:16 AM
Reposted by Alessandro De Simone
Dive into our latest findings on this powerful structure here: “The claustrum is critical for maintaining working memory” biorxiv.org/cgi/content/...
The claustrum is critical for maintaining working memory information
Working memory (WM) enables the mammalian brain to temporarily store and manipulate information, supporting cognitive tasks and communication processes. Rather than depending on a single specialized a...
biorxiv.org
November 22, 2024 at 7:50 AM