Dhwani Govil Batra
@dbtara.bsky.social
💯
Piling then all in one environment is as bad as relying on system install
Piling then all in one environment is as bad as relying on system install
I am working with an intern this summer, and I showed them how to install and use conda.
I recommend using separate environments for different conda tools
For example:
conda create -n seqkit
conda activate seqkit
conda install -c bioconda seqkit
(or conda create -n seqkit -c bioconda seqkit)
I recommend using separate environments for different conda tools
For example:
conda create -n seqkit
conda activate seqkit
conda install -c bioconda seqkit
(or conda create -n seqkit -c bioconda seqkit)
June 12, 2025 at 3:43 AM
💯
Piling then all in one environment is as bad as relying on system install
Piling then all in one environment is as bad as relying on system install
🖥️🧬
Penguin is our new assembler that reconstructs manyfold more accurate strain-level viral genomes and 16S rRNAs from metagenomes through a novel greedy AA/DNA-hybrid bayesian overlap extension strategy. Work by
Annika Jochheim et al.
📄 biorxiv.org/content/10.1...
💾 github.com/soedinglab/p...
Annika Jochheim et al.
📄 biorxiv.org/content/10.1...
💾 github.com/soedinglab/p...
April 1, 2024 at 12:49 AM
🖥️🧬
Reposted by Dhwani Govil Batra
Join the T2T consortium next Thursday, Apr 4, 12-4pm EDT for a webinar focused on the wet side of ultra-long read sequencing. We will have a half-day of seminars from top experts in the field sharing their advice plus a Q&A. Free and open to all. Register here: ucsc-seqtech-events.online
T2T Nanopore Ultra-Long Workshop |
ucsc-seqtech-events.online
March 27, 2024 at 8:18 PM
Join the T2T consortium next Thursday, Apr 4, 12-4pm EDT for a webinar focused on the wet side of ultra-long read sequencing. We will have a half-day of seminars from top experts in the field sharing their advice plus a Q&A. Free and open to all. Register here: ucsc-seqtech-events.online
Reposted by Dhwani Govil Batra
A great explainer from CDC's Dr. Amy Kirby on the use of targeted sequencing for #wastewater -based #pathogen #surveillance #nwss
This hands-on demonstration is one of my favorite things that AMD comms has come up with, and that's a pretty high bar. So cool.
youtu.be/Y-JLwynhF8E?...
This hands-on demonstration is one of my favorite things that AMD comms has come up with, and that's a pretty high bar. So cool.
youtu.be/Y-JLwynhF8E?...
How CDC targets pathogen genomes in wastewater to track disease trends
Wastewater monitoring is an early detection tool that can help communities prepare for and take action to address increasing cases of infectious diseases. CD...
youtu.be
March 6, 2024 at 9:39 PM
A great explainer from CDC's Dr. Amy Kirby on the use of targeted sequencing for #wastewater -based #pathogen #surveillance #nwss
This hands-on demonstration is one of my favorite things that AMD comms has come up with, and that's a pretty high bar. So cool.
youtu.be/Y-JLwynhF8E?...
This hands-on demonstration is one of my favorite things that AMD comms has come up with, and that's a pretty high bar. So cool.
youtu.be/Y-JLwynhF8E?...
This is neat, adding to genomics feed.
🧬🖥️
🧬🖥️
The hacked the @nanopore sequencer to read amino acids and PTMs along protein strands. This opens up the possibility for barcode sequencing at the protein level for highly multiplexed assays, PTM monitoring, and protein identification 🧬🧪🤯
www.biorxiv.org/content/10.1...
www.biorxiv.org/content/10.1...
Multi-pass, single-molecule nanopore reading of long protein strands with single-amino acid sensitiv...
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
October 23, 2023 at 4:16 AM
This is neat, adding to genomics feed.
🧬🖥️
🧬🖥️
Adding to the genomics feed.
🧬💻
🧬💻
Oh word?
October 23, 2023 at 4:08 AM
Adding to the genomics feed.
🧬💻
🧬💻
One thing I internalized today, do not stay after you stop being welcome and useful. You are ineffective and you kill your legacy.
September 30, 2023 at 2:52 AM
One thing I internalized today, do not stay after you stop being welcome and useful. You are ineffective and you kill your legacy.
If you are bioinformatician wishing to live in Anchorage, Alaska apply for
New Health Scientist (Bioinformatics) position for Arctic Investigations Program in Anchorage, AK.
External posting - www.usajobs.gov/job/751155300
Open & closing dates: 09/25/2023 to 10/03/2023
New Health Scientist (Bioinformatics) position for Arctic Investigations Program in Anchorage, AK.
External posting - www.usajobs.gov/job/751155300
Open & closing dates: 09/25/2023 to 10/03/2023
Health Scientist (Bioinformatics)
As a global leader in public health & health promotion, CDC is the agency Americans trust with their lives. In addition to our everyday work, each CDC employee has a role in supporting public health e...
www.usajobs.gov
September 29, 2023 at 1:36 AM
If you are bioinformatician wishing to live in Anchorage, Alaska apply for
New Health Scientist (Bioinformatics) position for Arctic Investigations Program in Anchorage, AK.
External posting - www.usajobs.gov/job/751155300
Open & closing dates: 09/25/2023 to 10/03/2023
New Health Scientist (Bioinformatics) position for Arctic Investigations Program in Anchorage, AK.
External posting - www.usajobs.gov/job/751155300
Open & closing dates: 09/25/2023 to 10/03/2023