Daniel
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danielpanadero.bsky.social
Daniel
@danielpanadero.bsky.social
Neuroscience PhD student @canalslab.bsky.social
Haha, exactly! Give it a try and let us know what you think—we’d love to hear how it works for you!
January 28, 2025 at 9:31 AM
Thanks so much, Jibran! Really glad you liked it—can’t wait to see how SAMson works for you!
January 28, 2025 at 9:24 AM
We hope that SAMson will help accelerate large-scale research workflows, making studies more efficient and reproducible. By simplifying key steps in rodent MRI analysis, we aim to advance translational neuroscience. (5/5)

#openscience #ai #neuroscience @neuroalc.bsky.social
January 27, 2025 at 1:37 PM
During the development of SAMson, I had the privilege of working under the guidance of Dr. Santiago Canals @canalslab.bsky.social, Dr. Antonio Pertusa, and Dr. Silvia De Santis @desantislab.bsky.social. I also thank my colleague @mokselim.bsky.social and everyone who provided data resources. (4/5)
January 27, 2025 at 1:37 PM
Alongside the tool, we have made the following resources publicly available:
- The complete code to replicate our study: github.com/CanalsLab/SA....
- All datasets used in our research: doi.org/10.20350/dig....
Find all details in the updated preprint: www.biorxiv.org/content/10.1.... (3/5)
SAMson: an automated brain extraction tool for rodents using SAM
Accurate brain extraction is a critical step in the analysis of rodent head magnetic resonance imaging (MRI) data. However, current methods often encounter difficulties in handling the diverse range o...
www.biorxiv.org
January 27, 2025 at 1:37 PM
SAMson is built upon the integration of a custom object detection algorithm and the unparalleled Segment Anything Model (SAM) by Meta AI. This combination has resulted in a robust, accurate, open-source solution to simplify skull-stripping in rodent MRI studies. (2/5)
January 27, 2025 at 1:37 PM