Deniz Akpinaroglu
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dakpinaroglu.bsky.social
Deniz Akpinaroglu
@dakpinaroglu.bsky.social
UCBerkeley and UCSF Bioengineering PhD candidate @KortemmeLab | NSF GRFP Fellow | Cat Mom
🧵 Work with Kosuke Seki, Amy Guo, Eleanor Zhu, Mark Kelly, and Tanja Kortemme
December 27, 2023 at 9:22 PM
🧵 Our "Top0" design (0% seq. id. to Top7) is soluble, monomeric, folded, and the HSQC spectrum reveals that "Top0" likely maintains a fold identical to Top7!
December 27, 2023 at 9:21 PM
🧵 We design and test novel proteins for de novo backbones. Most significantly, we evaluate a 0% sequence identity design for the famous Top7 fold
December 27, 2023 at 9:20 PM
🧵 Frame2seq is an IPA-based encoder-only model that achieves state-of-the-art native sequence recovery
December 27, 2023 at 9:19 PM