Esben
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cheminformania.com
Esben
@cheminformania.com
I like chemistry, computers and drug discovery. Sometimes blogs about cheminformatics, ML and neural networks for chemistry at cheminformania.com. Open source fanatic and science preprinter.
It will work best for the robot that made the data as we have more controlled conditions than the mess we have in our current available data , but it can probably be transfered to others with a few select experiments and adjustments. Not sure about QM, I'm not a big expert there.
June 26, 2025 at 8:02 PM
We need robitics before we can standardize the conditions enough to really make the ML shine. On the other hand we need the predictions and ML to make the robotics work.
June 26, 2025 at 6:42 PM
Tillykke😉
June 25, 2025 at 6:06 AM
Ah, I dont think Ill be in DK that date...
May 10, 2025 at 2:28 PM
Sadly, many coutries didn't even bother to care about the scientists already living there. US scientists are not special, they just had funding.
May 5, 2025 at 6:00 AM
Ja, underlige regler er der mange af. Men hele forskningsområdet har jo været udsultet over mange årtier, så det er lidt provokerende at der nu pludseligt skal gøres ekstra for specielle nationaliteter. Jeg selv endte med at udvandre, og det er nok ikke DK jeg flytter til hvis jeg flytter land igen.
April 27, 2025 at 10:27 AM
Hvad med at tiltrække forskere fra Danmark?
April 26, 2025 at 1:59 PM
8/ 📣 How do you use applicability domain estimation in chemML workflows?
Are these features helping your model validation or deployment? Let us know — and feel free to contribute or suggest more!
#cheminformatics #MachineLearning #OpenSource
April 8, 2025 at 2:29 PM
7/ 🙌 Huge thanks to @asiomchen, @Productivista, @mieczyslaw — and of course Olivier — for pushing the project forward!
We’re excited to see how the community uses these new tools. 👨‍🔬👩‍🔬
April 8, 2025 at 2:29 PM
6/ 2️⃣ Improved Custom Fingerprinting
We've made it easier to create and use your own molecular fingerprints.
3️⃣ Cleaner Code & UX Polish
• Typos fixed (yes, CheckSmilesSanitazion is now spelled right)
• Better subclass handling
• New hybrid logo for both light and dark background 🎨
April 8, 2025 at 2:29 PM
5/ 🔬 Try a full example:
👉 scikit-mol.readthedo...
Whether you're validating models or deciding what predictions to trust — AD is now built-in.
Applicability Domain Estimation - scikit-mol
scikit-learn classes for molecular vectorization using RDKit
scikit-mol.readthedocs.io
April 8, 2025 at 2:29 PM
4/ Includes:
• kNN, Leverage, and more
• Unified interfaces:
.predict() → in/out classification
.transform() → raw scores
.score_transform() → soft scores (0–1)
• Support for threshold fitting from validation sets
🧪
April 8, 2025 at 2:29 PM
3/ 1️⃣ Applicability Domain Estimators
Thanks to a generous code donation from Olivier J. M. Béquignon's MLChemAD, we’ve added a suite of AD estimators—standardized and integrated into the Scikit-Mol framework. 🙏
April 8, 2025 at 2:29 PM
2/ 🔬 What is Scikit-Mol?
An open-source library connecting #RDKit featurization with #Scikit-Learn workflows. It offers plug-and-play descriptors and fingerprints for ML in life sciences.
📦 github.com/EBjerrum/...
GitHub - EBjerrum/scikit-mol: scikit-learn classes for molecular vectorization using RDKit
scikit-learn classes for molecular vectorization using RDKit - EBjerrum/scikit-mol
github.com
April 8, 2025 at 2:29 PM
I remember I installed slackware Linux on my 486 laptop with 4 mb of ram using my brothers zipdrive. Had to hack the modelines to get X to work. The zipdisks had more storage than my harddrive! Nowadays its boringly easy.
April 2, 2025 at 5:59 PM
C:/>
March 27, 2025 at 8:29 PM
Who was he mocking?
March 16, 2025 at 3:25 PM
Whats the timings for both of them?
March 12, 2025 at 1:38 PM
Yes, it seems like an unnessecary complication.
March 7, 2025 at 5:02 PM