Childhood Cancer Data Lab
@cancerdatalab.bsky.social
Established by Alex’s Lemonade Stand Foundation (ALSF) to empower pediatric cancer experts poised for the next big discovery with the knowledge, data, and tools to reach it.
What you will learn:
-Integration of multiple single-cell RNA-seq libraries
-Approaches to differential expression analyses with single-cell data
-Working with CITE-seq data
-Common approaches for pathway analysis
Learn more and apply below!
-Integration of multiple single-cell RNA-seq libraries
-Approaches to differential expression analyses with single-cell data
-Working with CITE-seq data
-Common approaches for pathway analysis
Learn more and apply below!
Data Lab Advanced Single-Cell RNA-Seq Workshop, Virtual, December 8-12, 2025
Applications are open for the Data Lab's upcoming workshop, which will cover advanced topics in the analysis of single-cell RNA-seq data for researchers studying pediatric cancer. The course will be h...
www.ccdatalab.org
October 9, 2025 at 2:56 PM
What you will learn:
-Integration of multiple single-cell RNA-seq libraries
-Approaches to differential expression analyses with single-cell data
-Working with CITE-seq data
-Common approaches for pathway analysis
Learn more and apply below!
-Integration of multiple single-cell RNA-seq libraries
-Approaches to differential expression analyses with single-cell data
-Working with CITE-seq data
-Common approaches for pathway analysis
Learn more and apply below!
📊 Access rich datasets that include data, metadata, and expertly curated cell type annotations…for free!
September 30, 2025 at 2:00 PM
📊 Access rich datasets that include data, metadata, and expertly curated cell type annotations…for free!
🔍 User-friendly search and filter tools allow you to quickly find the projects you’re interested in.
September 30, 2025 at 2:00 PM
🔍 User-friendly search and filter tools allow you to quickly find the projects you’re interested in.
🔬Explore over 700 samples from 55 pediatric cancer types, all in one place.
September 30, 2025 at 2:00 PM
🔬Explore over 700 samples from 55 pediatric cancer types, all in one place.
🗓️ September 25 | 7-9:30 PM
📍 Poster Session A
🧾 "ews-nf: A custom workflow for tumor cell annotation and analysis of single-cell RNA-sequencing of paired patient Ewing sarcoma specimens from the Sean Karl cohort"
Connect with us at AACR and explore how we can support your research too!
📍 Poster Session A
🧾 "ews-nf: A custom workflow for tumor cell annotation and analysis of single-cell RNA-sequencing of paired patient Ewing sarcoma specimens from the Sean Karl cohort"
Connect with us at AACR and explore how we can support your research too!
September 23, 2025 at 4:10 PM
🗓️ September 25 | 7-9:30 PM
📍 Poster Session A
🧾 "ews-nf: A custom workflow for tumor cell annotation and analysis of single-cell RNA-sequencing of paired patient Ewing sarcoma specimens from the Sean Karl cohort"
Connect with us at AACR and explore how we can support your research too!
📍 Poster Session A
🧾 "ews-nf: A custom workflow for tumor cell annotation and analysis of single-cell RNA-sequencing of paired patient Ewing sarcoma specimens from the Sean Karl cohort"
Connect with us at AACR and explore how we can support your research too!
Are you presenting at any of these events? Drop your poster or demo info in the comments. We hope to see you there!
September 8, 2025 at 3:52 PM
Are you presenting at any of these events? Drop your poster or demo info in the comments. We hope to see you there!
📍 NCI Office of Data Sharing Annual Symposium
Learn how to access and use pediatric cancer data that may align with your research interests! Catch our live demo of the #SingleCell #PediatricCancer Atlas (ScPCA) Portal.
📆 Stop by our table during poster/demo sessions on September 30 and October 1!
Learn how to access and use pediatric cancer data that may align with your research interests! Catch our live demo of the #SingleCell #PediatricCancer Atlas (ScPCA) Portal.
📆 Stop by our table during poster/demo sessions on September 30 and October 1!
September 8, 2025 at 3:52 PM
📍 NCI Office of Data Sharing Annual Symposium
Learn how to access and use pediatric cancer data that may align with your research interests! Catch our live demo of the #SingleCell #PediatricCancer Atlas (ScPCA) Portal.
📆 Stop by our table during poster/demo sessions on September 30 and October 1!
Learn how to access and use pediatric cancer data that may align with your research interests! Catch our live demo of the #SingleCell #PediatricCancer Atlas (ScPCA) Portal.
📆 Stop by our table during poster/demo sessions on September 30 and October 1!
📍 #AACR Special Conference in Cancer Research - Discovery and Innovation in #PediatricCancer
We’re showcasing an ongoing collaboration, supporting a multi-institutional effort to understand the therapeutic vulnerabilities of #EwingSarcoma.
📆 Poster Session A on September 25 (7-9:30 PM).
We’re showcasing an ongoing collaboration, supporting a multi-institutional effort to understand the therapeutic vulnerabilities of #EwingSarcoma.
📆 Poster Session A on September 25 (7-9:30 PM).
September 8, 2025 at 3:52 PM
📍 #AACR Special Conference in Cancer Research - Discovery and Innovation in #PediatricCancer
We’re showcasing an ongoing collaboration, supporting a multi-institutional effort to understand the therapeutic vulnerabilities of #EwingSarcoma.
📆 Poster Session A on September 25 (7-9:30 PM).
We’re showcasing an ongoing collaboration, supporting a multi-institutional effort to understand the therapeutic vulnerabilities of #EwingSarcoma.
📆 Poster Session A on September 25 (7-9:30 PM).
📣 Upcoming workshop!
Topic: Reproducible Research Practices
Dates: November 6-7, 2025
Location: Philadelphia, PA
Learn more and apply. ⤵️
Topic: Reproducible Research Practices
Dates: November 6-7, 2025
Location: Philadelphia, PA
Learn more and apply. ⤵️
Level Up Your Reproducible Research Skills at Our Next Workshop!
At the Childhood Cancer Data Lab, we’re committed to helping pediatric cancer researchers work more efficiently, collaboratively, and reproducibly. That’s why we created our Reproducible Research Prac...
www.ccdatalab.org
August 20, 2025 at 2:55 PM
📣 Upcoming workshop!
Topic: Reproducible Research Practices
Dates: November 6-7, 2025
Location: Philadelphia, PA
Learn more and apply. ⤵️
Topic: Reproducible Research Practices
Dates: November 6-7, 2025
Location: Philadelphia, PA
Learn more and apply. ⤵️
Whether you're looking to set up efficient processes in your lab, improve your ability to share data and code, or manage a collaborative project, this workshop can set you up for success.
🚀 Read our blog for full details and to apply!
🚀 Read our blog for full details and to apply!
Level Up Your Reproducible Research Skills at Our Next Workshop!
At the Childhood Cancer Data Lab, we’re committed to helping pediatric cancer researchers work more efficiently, collaboratively, and reproducibly. That’s why we created our Reproducible Research Prac...
www.ccdatalab.org
August 4, 2025 at 2:01 PM
Whether you're looking to set up efficient processes in your lab, improve your ability to share data and code, or manage a collaborative project, this workshop can set you up for success.
🚀 Read our blog for full details and to apply!
🚀 Read our blog for full details and to apply!
🚀 Easily download 700 samples from over 55 pediatric cancer types at scpca.alexslemonade.org!
July 24, 2025 at 4:26 PM
🚀 Easily download 700 samples from over 55 pediatric cancer types at scpca.alexslemonade.org!
Check out the ScPCA preprint on bioRxiv for more details about these updates, and visit scpca.alexslemonade.org to download the data!
The Single-cell Pediatric Cancer Atlas: Data portal and open-source tools for single-cell transcriptomics of pediatric tumors
The Single-cell Pediatric Cancer Atlas (ScPCA) Portal (<https://scpca.alexslemonade.org/>) is a data resource for uniformly processed single-cell and single-nuclei RNA sequencing (RNA-seq) data and de...
www.biorxiv.org
July 1, 2025 at 5:06 PM
Check out the ScPCA preprint on bioRxiv for more details about these updates, and visit scpca.alexslemonade.org to download the data!
Several projects on the Portal contain bulk RNA-seq data in addition to single-cell/nuclei RNA-seq data. We compared modalities across five solid tumor projects to explore potential biological differences.
July 1, 2025 at 5:06 PM
Several projects on the Portal contain bulk RNA-seq data in addition to single-cell/nuclei RNA-seq data. We compared modalities across five solid tumor projects to explore potential biological differences.
Using an ontology-based approach, we have assigned consensus cell types to all samples on the ScPCA Portal. They are now included in all processed and merged datasets from the Portal!
July 1, 2025 at 5:06 PM
Using an ontology-based approach, we have assigned consensus cell types to all samples on the ScPCA Portal. They are now included in all processed and merged datasets from the Portal!