Brent Pedersen
@brent-p.bsky.social
dad
genomics, bioinformatics
rust, nim, python, go, c, bash, awk, js
genomics, bioinformatics
rust, nim, python, go, c, bash, awk, js
thank you. I'll have a look next week!
November 21, 2025 at 6:31 PM
thank you. I'll have a look next week!
thanks Matt! Is this: docs.rs/aardvark-bio...
the entry point if I want to compare, e.g. 2 STR variants with slightly different positions to see if they are identical?
(Would be nice to have a quick example 😜)
the entry point if I want to compare, e.g. 2 STR variants with slightly different positions to see if they are identical?
(Would be nice to have a quick example 😜)
November 21, 2025 at 5:56 PM
thanks Matt! Is this: docs.rs/aardvark-bio...
the entry point if I want to compare, e.g. 2 STR variants with slightly different positions to see if they are identical?
(Would be nice to have a quick example 😜)
the entry point if I want to compare, e.g. 2 STR variants with slightly different positions to see if they are identical?
(Would be nice to have a quick example 😜)
Reposted by Brent Pedersen
yep! that's what I was thinking of. Thank you! (for software and pointer)
November 18, 2025 at 6:26 PM
yep! that's what I was thinking of. Thank you! (for software and pointer)
awesome! it'll take me some time to digest this but this gives me a great start. thank you!
January 27, 2025 at 5:48 PM
awesome! it'll take me some time to digest this but this gives me a great start. thank you!
and thanks for your offer to help!
January 27, 2025 at 5:17 PM
and thanks for your offer to help!
I think it might require more interactive help, but here's the error. I understand why, but not how to architect my code to fix.
![error[E0599]: the method `indexed_records` exists for struct `Query<'_, &mut Reader<BufReader<File>>>`, but its trait bounds were not satisfied
--> src/lib.rs:374:27
|
374 | let q = q.indexed_records(&header).filter_by_region(®ion);
| ^^^^^^^^^^^^^^^ method cannot be called on `Query<'_, &mut Reader<BufReader<File>>>` due to unsatisfied trait bounds
|
= note: the following trait bounds were not satisfied:
`&mut noodles::noodles_bgzf::Reader<BufReader<File>>: noodles::noodles_bgzf::io::BufRead`
`&mut noodles::noodles_bgzf::Reader<BufReader<File>>: noodles::noodles_bgzf::io::Seek`](https://cdn.bsky.app/img/feed_thumbnail/plain/did:plc:b4x3jqelv3boot7op2yo7kkw/bafkreifwvimn7r32ddejzdsu6yqyzp7uyo3lcrs24k7qnt5de2o647a4ge@jpeg)
January 27, 2025 at 5:17 PM
I think it might require more interactive help, but here's the error. I understand why, but not how to architect my code to fix.
also see BITS alg by Ryan Layer and @aaronquinlan.bsky.social academic.oup.com/bioinformati...
November 20, 2024 at 10:59 PM
also see BITS alg by Ryan Layer and @aaronquinlan.bsky.social academic.oup.com/bioinformati...