Ben Raphael
@braphael.bsky.social
Graduate Class of 1991 Professor of Computer Science, Princeton University
Reposted by Ben Raphael
Ben Raphael, Niko Beerenwinkel, Chris Venditti, and George Butler will discuss "Computational Approaches to Cancer Evolution" in a plenary session at the AACR Special Conference on Cancer Evolution (December 4-6; Albuquerque). Learn more:
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#AACRevol25 @braphael.bsky.social
buff.ly/5kEQyE8
#AACRevol25 @braphael.bsky.social
Program
Program details for AACR Special Conference in Cancer Research Cancer Evolution
buff.ly
October 27, 2025 at 5:18 PM
Ben Raphael, Niko Beerenwinkel, Chris Venditti, and George Butler will discuss "Computational Approaches to Cancer Evolution" in a plenary session at the AACR Special Conference on Cancer Evolution (December 4-6; Albuquerque). Learn more:
buff.ly/5kEQyE8
#AACRevol25 @braphael.bsky.social
buff.ly/5kEQyE8
#AACRevol25 @braphael.bsky.social
Reposted by Ben Raphael
Check out this new publication by IICD member @braphael.bsky.social and team in @natcomms.nature.com: Graph Homomorphism Approach for Unraveling Histories of Metastatic Cancers and Viral Outbreaks under Evolutionary Constraints
www.nature.com/articles/s41...
www.nature.com/articles/s41...
A graph homomorphism approach for unraveling histories of metastatic cancers and viral outbreaks under evolutionary constraints - Nature Communications
Human diseases may evolve by migration or spread, but understanding these complex processes is challenging. Here, the authors leverage graph homomorphisms to reconstruct trees describing histories of ...
www.nature.com
September 8, 2025 at 1:59 PM
Check out this new publication by IICD member @braphael.bsky.social and team in @natcomms.nature.com: Graph Homomorphism Approach for Unraveling Histories of Metastatic Cancers and Viral Outbreaks under Evolutionary Constraints
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Ben Raphael
How do we detect spatially variable genes (SVGs) in spatial transcriptomics?
In our Nature Communications review, we categorize 34 computational methods into three categories:
✅ Overall SVGs
✅ Cell-type-specific SVGs
✅ Spatial-domain-marker SVGs
www.nature.com/articles/s41...
In our Nature Communications review, we categorize 34 computational methods into three categories:
✅ Overall SVGs
✅ Cell-type-specific SVGs
✅ Spatial-domain-marker SVGs
www.nature.com/articles/s41...
Categorization of 34 computational methods to detect spatially variable genes from spatially resolved transcriptomics data - Nature Communications
In spatial transcriptomics data analysis, identifying spatially variable genes (SVGs) is crucial for understanding tissue organization and function. The authors categorize 34 computational methods for...
www.nature.com
February 5, 2025 at 7:50 PM
How do we detect spatially variable genes (SVGs) in spatial transcriptomics?
In our Nature Communications review, we categorize 34 computational methods into three categories:
✅ Overall SVGs
✅ Cell-type-specific SVGs
✅ Spatial-domain-marker SVGs
www.nature.com/articles/s41...
In our Nature Communications review, we categorize 34 computational methods into three categories:
✅ Overall SVGs
✅ Cell-type-specific SVGs
✅ Spatial-domain-marker SVGs
www.nature.com/articles/s41...
Reposted by Ben Raphael
Friends, I am at a loss of words for how devastating it would be to lose the entire intramural #NIH program. Some of the biggest medical and scientific breakthroughs have come from scientists in the NIH Intramural program. #SaveTheNIH 🧬🧪 🖥️ 🧠
www.science.org/content/arti...
www.science.org/content/arti...
NIH ban on renewing senior scientists adds to assaults on its in-house research
Policy follows firings of tenure-track scientists and suspension of training programs
www.science.org
February 27, 2025 at 12:04 PM
Friends, I am at a loss of words for how devastating it would be to lose the entire intramural #NIH program. Some of the biggest medical and scientific breakthroughs have come from scientists in the NIH Intramural program. #SaveTheNIH 🧬🧪 🖥️ 🧠
www.science.org/content/arti...
www.science.org/content/arti...
RECOMB-CCB workshop is combing to Seoul, chaired by @shenhui1986.bsky.social and Andrew Roth! Submissions are open for papers and abstracts
Call for Papers: RECOMB Computational Cancer Biology
Workshop: April 24-25, 2025
Location: Seoul, South Korea
Abstract registration: February 7, 2025
Paper submission: February 14, 2025
More details: recomb.org/recomb-ccb20...
Workshop: April 24-25, 2025
Location: Seoul, South Korea
Abstract registration: February 7, 2025
Paper submission: February 14, 2025
More details: recomb.org/recomb-ccb20...
RECOMB-CCB: Computational Cancer Biology
recomb.org
January 22, 2025 at 3:16 PM
RECOMB-CCB workshop is combing to Seoul, chaired by @shenhui1986.bsky.social and Andrew Roth! Submissions are open for papers and abstracts
Reposted by Ben Raphael
Impressions from Ascona Workshop: Spatial and temporal statistical modeling in molecular biology
www.huber.embl.de/group/events...
www.huber.embl.de/group/events...
September 9, 2024 at 3:30 PM
Impressions from Ascona Workshop: Spatial and temporal statistical modeling in molecular biology
www.huber.embl.de/group/events...
www.huber.embl.de/group/events...
Reposted by Ben Raphael
Now: Keynote by Peter Park: A new mechanism for oncogene amplification. #RECOMB2024 💻🧬🧪
RECOMB-CCB: Computational Cancer Biology
recomb.org
April 27, 2024 at 5:34 PM
Now: Keynote by Peter Park: A new mechanism for oncogene amplification. #RECOMB2024 💻🧬🧪