bioRxiv Genomics
@biorxiv-genomic.bsky.social
MELODY: Mediation Analysis in Logistic Regression for High-Dimensional Mediators and a Binary Outcome https://www.biorxiv.org/content/10.1101/2025.11.12.688038v1
November 13, 2025 at 8:37 PM
MELODY: Mediation Analysis in Logistic Regression for High-Dimensional Mediators and a Binary Outcome https://www.biorxiv.org/content/10.1101/2025.11.12.688038v1
Differential nucleosome organization in human interphase and metaphase chromosomes https://www.biorxiv.org/content/10.1101/2025.11.11.687715v1
November 13, 2025 at 3:34 AM
Differential nucleosome organization in human interphase and metaphase chromosomes https://www.biorxiv.org/content/10.1101/2025.11.11.687715v1
Tick Genome Assemblies: Overcoming biological limitations through advances in sequencing and assembly https://www.biorxiv.org/content/10.1101/2025.11.11.687924v1
November 13, 2025 at 3:34 AM
Tick Genome Assemblies: Overcoming biological limitations through advances in sequencing and assembly https://www.biorxiv.org/content/10.1101/2025.11.11.687924v1
Diverse expression and modification of tRNAs and tRNA-derived RNAs in 19 mouse tissues https://www.biorxiv.org/content/10.1101/2025.11.11.685198v1
November 13, 2025 at 2:33 AM
Diverse expression and modification of tRNAs and tRNA-derived RNAs in 19 mouse tissues https://www.biorxiv.org/content/10.1101/2025.11.11.685198v1
Putative azithromycin-resistance mutations in Chlamydia trachomatis are globally distributed but arose before azithromycin was discovered https://www.biorxiv.org/content/10.1101/2025.11.10.687758v1
November 12, 2025 at 10:33 PM
Putative azithromycin-resistance mutations in Chlamydia trachomatis are globally distributed but arose before azithromycin was discovered https://www.biorxiv.org/content/10.1101/2025.11.10.687758v1
Dissecting the Cellular Genetics of Cardiovascular Disease Through Endothelial and Immune Compartments Profiling https://www.biorxiv.org/content/10.1101/2025.11.10.687750v1
November 12, 2025 at 9:33 PM
Dissecting the Cellular Genetics of Cardiovascular Disease Through Endothelial and Immune Compartments Profiling https://www.biorxiv.org/content/10.1101/2025.11.10.687750v1
Superabundant microRNAs are transcribed from human rDNA spacer promoters insulated by CTCF https://www.biorxiv.org/content/10.1101/2025.11.10.687711v1
November 12, 2025 at 8:34 PM
Superabundant microRNAs are transcribed from human rDNA spacer promoters insulated by CTCF https://www.biorxiv.org/content/10.1101/2025.11.10.687711v1
Metagenomes and Metagenome-Assembled Genomes from Microbial Communities in a Biological Nutrient Removal Plant Operated at Hamptons Road Sanitation District (HRSD) with High and Low Dissolved Oxygen Conditions https://www.biorxiv.org/content/10.1101/2025.11.10.687637v1
November 12, 2025 at 3:39 PM
Metagenomes and Metagenome-Assembled Genomes from Microbial Communities in a Biological Nutrient Removal Plant Operated at Hamptons Road Sanitation District (HRSD) with High and Low Dissolved Oxygen Conditions https://www.biorxiv.org/content/10.1101/2025.11.10.687637v1
Chromosome-level genome assemblies of Nicotiana attenuata and Nicotiana obtusifolia https://www.biorxiv.org/content/10.1101/2025.11.10.687602v1
November 12, 2025 at 12:34 AM
Chromosome-level genome assemblies of Nicotiana attenuata and Nicotiana obtusifolia https://www.biorxiv.org/content/10.1101/2025.11.10.687602v1
Hidden Markov Models Detect Recombination and Ancestry of SARS-CoV-2 https://www.biorxiv.org/content/10.1101/2025.11.08.687354v1
November 11, 2025 at 2:33 AM
Hidden Markov Models Detect Recombination and Ancestry of SARS-CoV-2 https://www.biorxiv.org/content/10.1101/2025.11.08.687354v1
Longitudinal multimodal characterization of radiation dermatitis in the C57BL/6J mouse model https://www.biorxiv.org/content/10.1101/2025.11.08.687376v1
November 10, 2025 at 10:37 PM
Longitudinal multimodal characterization of radiation dermatitis in the C57BL/6J mouse model https://www.biorxiv.org/content/10.1101/2025.11.08.687376v1
Can Lightweight LLM Agents Improve Spatial TranscriptomicsAnnotation? https://www.biorxiv.org/content/10.1101/2025.11.08.687410v1
November 10, 2025 at 10:36 PM
Can Lightweight LLM Agents Improve Spatial TranscriptomicsAnnotation? https://www.biorxiv.org/content/10.1101/2025.11.08.687410v1
A chromosome-scale genome assembly for Clark's Nutcracker (Nucifraga columbiana) https://www.biorxiv.org/content/10.1101/2025.11.06.687043v1
November 10, 2025 at 1:36 PM
A chromosome-scale genome assembly for Clark's Nutcracker (Nucifraga columbiana) https://www.biorxiv.org/content/10.1101/2025.11.06.687043v1
Challenges in predicting chromatin accessibility differences between species https://www.biorxiv.org/content/10.1101/2025.11.09.687449v1
November 10, 2025 at 12:34 PM
Challenges in predicting chromatin accessibility differences between species https://www.biorxiv.org/content/10.1101/2025.11.09.687449v1
Integrated analysis of multimodal long-read epigenetic assays https://www.biorxiv.org/content/10.1101/2025.11.09.687458v1
November 10, 2025 at 3:36 AM
Integrated analysis of multimodal long-read epigenetic assays https://www.biorxiv.org/content/10.1101/2025.11.09.687458v1
MEDUSA: Maintaining Entire DNA Duplexes for Utmost Sequencing Accuracy https://www.biorxiv.org/content/10.1101/2025.11.07.687202v1
November 9, 2025 at 4:33 AM
MEDUSA: Maintaining Entire DNA Duplexes for Utmost Sequencing Accuracy https://www.biorxiv.org/content/10.1101/2025.11.07.687202v1
LRMD: Reference-Free Misassembly Detection Based on Multiple Features from Long-Read Alignments https://www.biorxiv.org/content/10.1101/2025.11.07.686952v1
November 9, 2025 at 4:33 AM
LRMD: Reference-Free Misassembly Detection Based on Multiple Features from Long-Read Alignments https://www.biorxiv.org/content/10.1101/2025.11.07.686952v1
Estimating haplotype values and mutation effects in the context of a local DNA tree https://www.biorxiv.org/content/10.1101/2025.11.08.687335v1
November 9, 2025 at 3:34 AM
Estimating haplotype values and mutation effects in the context of a local DNA tree https://www.biorxiv.org/content/10.1101/2025.11.08.687335v1
SPARK: in silico simulations for benchmarking nascent RNA sequencing experiments https://www.biorxiv.org/content/10.1101/2025.11.06.687082v1
November 8, 2025 at 5:33 PM
SPARK: in silico simulations for benchmarking nascent RNA sequencing experiments https://www.biorxiv.org/content/10.1101/2025.11.06.687082v1
Extracellular matrix and cytoskeletal reverse remodeling pathways are key drivers of myocardial recovery following left ventricular assist device therapy https://www.biorxiv.org/content/10.1101/2025.11.06.687098v1
November 8, 2025 at 5:33 PM
Extracellular matrix and cytoskeletal reverse remodeling pathways are key drivers of myocardial recovery following left ventricular assist device therapy https://www.biorxiv.org/content/10.1101/2025.11.06.687098v1
AI-assisted Image-Based Phenotyping Reveals Genetic Architecture of Pod Traits in Mungbean (Vigna radiata L.) https://www.biorxiv.org/content/10.1101/2025.11.06.687031v1
November 8, 2025 at 1:34 PM
AI-assisted Image-Based Phenotyping Reveals Genetic Architecture of Pod Traits in Mungbean (Vigna radiata L.) https://www.biorxiv.org/content/10.1101/2025.11.06.687031v1
Nona: A unifying multimodal masking framework for functional genomics https://www.biorxiv.org/content/10.1101/2025.11.06.687036v1
November 8, 2025 at 1:34 PM
Nona: A unifying multimodal masking framework for functional genomics https://www.biorxiv.org/content/10.1101/2025.11.06.687036v1
Sample-multiplexed FACS-preprocessing of PBMCs enables scalable scRNA-seq without compromising transcriptomic or cellular integrity https://www.biorxiv.org/content/10.1101/2025.11.06.687014v1
November 8, 2025 at 3:35 AM
Sample-multiplexed FACS-preprocessing of PBMCs enables scalable scRNA-seq without compromising transcriptomic or cellular integrity https://www.biorxiv.org/content/10.1101/2025.11.06.687014v1
Dici: a novel DNA transposon reshaping the genome of the opportunistic yeast Diutina catenulata https://www.biorxiv.org/content/10.1101/2025.11.06.686975v1
November 8, 2025 at 3:34 AM
Dici: a novel DNA transposon reshaping the genome of the opportunistic yeast Diutina catenulata https://www.biorxiv.org/content/10.1101/2025.11.06.686975v1
The tiny germline chromosomes of Paramecium aurelia have anexceptionally high recombination rate and are capped by a new class of Helitrons https://www.biorxiv.org/content/10.1101/2025.11.06.686955v1
November 8, 2025 at 2:34 AM
The tiny germline chromosomes of Paramecium aurelia have anexceptionally high recombination rate and are capped by a new class of Helitrons https://www.biorxiv.org/content/10.1101/2025.11.06.686955v1