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Development of a metabolic signature of post-weaning diarrhoea in pigs https://www.biorxiv.org/content/10.1101/2025.11.17.688604v1
November 18, 2025 at 12:46 AM
Development of a metabolic signature of post-weaning diarrhoea in pigs https://www.biorxiv.org/content/10.1101/2025.11.17.688604v1
ProtAttn-QuadNet: An attention-based deep learning framework for protein-protein interaction prediction using ProtBERT embeddings https://www.biorxiv.org/content/10.1101/2025.11.17.688786v1
November 17, 2025 at 11:46 PM
ProtAttn-QuadNet: An attention-based deep learning framework for protein-protein interaction prediction using ProtBERT embeddings https://www.biorxiv.org/content/10.1101/2025.11.17.688786v1
AstroLogics: A simulation-based analysis framework for monotonous Boolean model ensemble https://www.biorxiv.org/content/10.1101/2025.11.17.688236v1
November 17, 2025 at 10:47 PM
AstroLogics: A simulation-based analysis framework for monotonous Boolean model ensemble https://www.biorxiv.org/content/10.1101/2025.11.17.688236v1
Primer Blind Spots: Underrepresentation of ESKAPE Pathogens from Developing Regions in 16S rRNA Targeted Sequencing https://www.biorxiv.org/content/10.1101/2025.11.17.688800v1
November 17, 2025 at 10:47 PM
Primer Blind Spots: Underrepresentation of ESKAPE Pathogens from Developing Regions in 16S rRNA Targeted Sequencing https://www.biorxiv.org/content/10.1101/2025.11.17.688800v1
BioPrediction-PPI: Simplifying the Prediction of Protein-Protein Interactions through Artificial Intelligence https://www.biorxiv.org/content/10.1101/2025.11.16.688401v1
November 17, 2025 at 6:46 PM
BioPrediction-PPI: Simplifying the Prediction of Protein-Protein Interactions through Artificial Intelligence https://www.biorxiv.org/content/10.1101/2025.11.16.688401v1
Toward Accurate RNA Non-Canonical Structure Prediction: The NC-Bench Benchmark and the NCfold Framework https://www.biorxiv.org/content/10.1101/2025.11.16.688746v1
November 17, 2025 at 6:46 PM
Toward Accurate RNA Non-Canonical Structure Prediction: The NC-Bench Benchmark and the NCfold Framework https://www.biorxiv.org/content/10.1101/2025.11.16.688746v1
Minute-scale single-cell transcriptomics enables dynamic modeling of cellular behavior https://www.biorxiv.org/content/10.1101/2025.11.15.688181v1
November 17, 2025 at 5:46 PM
Minute-scale single-cell transcriptomics enables dynamic modeling of cellular behavior https://www.biorxiv.org/content/10.1101/2025.11.15.688181v1
Inferring binding specificities of human transcription factors with the wisdom of crowds https://www.biorxiv.org/content/10.1101/2025.11.16.688692v1
November 17, 2025 at 5:46 PM
Inferring binding specificities of human transcription factors with the wisdom of crowds https://www.biorxiv.org/content/10.1101/2025.11.16.688692v1
A Multi-Omic Atlas of Convergent and Divergent Metabolic Regulatory Circuitries in Cancer https://www.biorxiv.org/content/10.1101/2025.11.15.688631v1
November 17, 2025 at 4:47 PM
A Multi-Omic Atlas of Convergent and Divergent Metabolic Regulatory Circuitries in Cancer https://www.biorxiv.org/content/10.1101/2025.11.15.688631v1
PaNDA: Efficient Optimization of Phylogenetic Diversity in Networks https://www.biorxiv.org/content/10.1101/2025.11.14.688467v1
November 17, 2025 at 3:48 PM
PaNDA: Efficient Optimization of Phylogenetic Diversity in Networks https://www.biorxiv.org/content/10.1101/2025.11.14.688467v1
SpaTranslator: A deep generative framework for universal spatial multi-omics cross-modality translation https://www.biorxiv.org/content/10.1101/2025.11.15.688644v1
November 17, 2025 at 7:46 AM
SpaTranslator: A deep generative framework for universal spatial multi-omics cross-modality translation https://www.biorxiv.org/content/10.1101/2025.11.15.688644v1
Predicting gene-specific regulation with transcriptomic andepigenetic single-cell data https://www.biorxiv.org/content/10.1101/2025.11.16.688671v1
November 17, 2025 at 2:48 AM
Predicting gene-specific regulation with transcriptomic andepigenetic single-cell data https://www.biorxiv.org/content/10.1101/2025.11.16.688671v1
Accelerated and High-Accuracy Variant Calling on Oxford Nanopore Technologies Sequencing Data with the Sentieon DNAscope LongRead and Hybrid Pipelines https://www.biorxiv.org/content/10.1101/2025.11.14.688541v1
November 17, 2025 at 2:48 AM
Accelerated and High-Accuracy Variant Calling on Oxford Nanopore Technologies Sequencing Data with the Sentieon DNAscope LongRead and Hybrid Pipelines https://www.biorxiv.org/content/10.1101/2025.11.14.688541v1
mIDEA: An Interpretable Structure-Sequence Model for Methylation-Dependent Protein-DNA Binding Sensitivity https://www.biorxiv.org/content/10.1101/2025.11.14.688575v1
November 17, 2025 at 2:48 AM
mIDEA: An Interpretable Structure-Sequence Model for Methylation-Dependent Protein-DNA Binding Sensitivity https://www.biorxiv.org/content/10.1101/2025.11.14.688575v1
Sequence-aware Prediction of Point Mutation-induced Effects on Protein-Protein Binding Affinity using Deep Learning https://www.biorxiv.org/content/10.1101/2025.11.15.688659v1
November 17, 2025 at 2:47 AM
Sequence-aware Prediction of Point Mutation-induced Effects on Protein-Protein Binding Affinity using Deep Learning https://www.biorxiv.org/content/10.1101/2025.11.15.688659v1
Using Large Language Models to Assemble, Audit, and Prioritize the Therapeutic Landscape https://www.biorxiv.org/content/10.1101/2025.11.14.688562v1
November 17, 2025 at 1:46 AM
Using Large Language Models to Assemble, Audit, and Prioritize the Therapeutic Landscape https://www.biorxiv.org/content/10.1101/2025.11.14.688562v1
Contrastive modelling of transcription and transcript abundance in legumes using PlanTT https://www.biorxiv.org/content/10.1101/2025.11.15.685414v1
November 17, 2025 at 1:46 AM
Contrastive modelling of transcription and transcript abundance in legumes using PlanTT https://www.biorxiv.org/content/10.1101/2025.11.15.685414v1
Cell-Type-Resolved Isoform Atlas of Human Tissues Reveals Age and Alzheimer's Disease-Associated Splicing Changes https://www.biorxiv.org/content/10.1101/2025.11.14.688520v1
November 16, 2025 at 8:47 AM
Cell-Type-Resolved Isoform Atlas of Human Tissues Reveals Age and Alzheimer's Disease-Associated Splicing Changes https://www.biorxiv.org/content/10.1101/2025.11.14.688520v1
Multimodal AI Decodes Extreme Environment Functional Dark Matter Beyond Homology https://www.biorxiv.org/content/10.1101/2025.11.15.688615v1
November 16, 2025 at 4:46 AM
Multimodal AI Decodes Extreme Environment Functional Dark Matter Beyond Homology https://www.biorxiv.org/content/10.1101/2025.11.15.688615v1
Genolator: A Multimodal Large Language Model Fusing Natural Language, Genomic, and Structural Tokens for Protein Function Interpretation https://www.biorxiv.org/content/10.1101/2025.11.14.688396v1
November 15, 2025 at 3:47 AM
Genolator: A Multimodal Large Language Model Fusing Natural Language, Genomic, and Structural Tokens for Protein Function Interpretation https://www.biorxiv.org/content/10.1101/2025.11.14.688396v1
Denoising image-based spatial transcriptomics data with DenoIST https://www.biorxiv.org/content/10.1101/2025.11.13.688387v1
November 15, 2025 at 3:47 AM
Denoising image-based spatial transcriptomics data with DenoIST https://www.biorxiv.org/content/10.1101/2025.11.13.688387v1
Batch-Harmonized Machine Learning Framework for Cross-Cohort RNA Biomarker Discovery in Pancreatic Adenocarcinoma https://www.biorxiv.org/content/10.1101/2025.11.14.688421v1
November 15, 2025 at 3:47 AM
Batch-Harmonized Machine Learning Framework for Cross-Cohort RNA Biomarker Discovery in Pancreatic Adenocarcinoma https://www.biorxiv.org/content/10.1101/2025.11.14.688421v1
PMGen: From Peptide-MHC Prediction to Neoantigen Generation https://www.biorxiv.org/content/10.1101/2025.11.14.688404v1
November 15, 2025 at 3:47 AM
PMGen: From Peptide-MHC Prediction to Neoantigen Generation https://www.biorxiv.org/content/10.1101/2025.11.14.688404v1
Elucidating the conformational dynamics of the mitochondrial localization signal, M3, of TDP-43 and accessing potential inhibitors using molecular docking and simulation https://www.biorxiv.org/content/10.1101/2025.11.13.688389v1
November 15, 2025 at 3:47 AM
Elucidating the conformational dynamics of the mitochondrial localization signal, M3, of TDP-43 and accessing potential inhibitors using molecular docking and simulation https://www.biorxiv.org/content/10.1101/2025.11.13.688389v1
Kinetic modeling of continuous meta-fermentation quantifies metabolic activity in a complex microbial system https://www.biorxiv.org/content/10.1101/2025.11.13.688382v1
November 15, 2025 at 2:47 AM
Kinetic modeling of continuous meta-fermentation quantifies metabolic activity in a complex microbial system https://www.biorxiv.org/content/10.1101/2025.11.13.688382v1