Bacterial Genomics
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Unofficial feed from http://Nature.com bacterial genomics subject (https://www.nature.com/subjects/bacterial-genomics). Maintained by @sentausa.bsky.social
High frequency body site translocation of nosocomial Pseudomonas aeruginosa www.nature.com/articles/s41...
High frequency body site translocation of nosocomial Pseudomonas aeruginosa - Nature Communications
Here, the authors report within-host diversity and body site translocation dynamics in hospital samples of Pseudomonas aeruginosa and reveal that body site sharing was likely due to within-patient tra...
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November 25, 2025 at 2:05 PM
High frequency body site translocation of nosocomial Pseudomonas aeruginosa www.nature.com/articles/s41...
Introgression impacts the evolution of bacteria, but species borders are rarely fuzzy www.nature.com/articles/s41...
Introgression impacts the evolution of bacteria, but species borders are rarely fuzzy - Nature Communications
It is commonly thought that bacterial species borders tend to be fuzzy, due to frequent exchange of DNA. Here, Diop et al. quantify the patterns of gene flow between core genomes across 50 major bacte...
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November 14, 2025 at 6:01 AM
Introgression impacts the evolution of bacteria, but species borders are rarely fuzzy www.nature.com/articles/s41...
Circulation of Salmonella spp. between humans, animals and the environment in animal-owning households in Malawi www.nature.com/articles/s41...
Circulation of Salmonella spp. between humans, animals and the environment in animal-owning households in Malawi - Nature Communications
In this work, Wilson et al., examined sharing of Salmonella between humans, animals and the environment using household samples from Malawi. They revealed an interconnected web of Salmonella circulati...
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November 12, 2025 at 11:24 AM
Circulation of Salmonella spp. between humans, animals and the environment in animal-owning households in Malawi www.nature.com/articles/s41...
PGAP2: A comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks www.nature.com/articles/s41...
PGAP2: A comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks - Nature Communications
Prokaryotic pan-genome analysis is crucial for understanding microbial diversity, however current analytical methods often struggle to balance accuracy and computational efficiency. Here the authors p...
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November 10, 2025 at 11:37 PM
PGAP2: A comprehensive toolkit for prokaryotic pan-genome analysis based on fine-grained feature networks www.nature.com/articles/s41...
Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral www.nature.com/articles/s41...
Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral - Scientific Data
Scientific Data - Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral
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October 30, 2025 at 10:09 PM
Complete genome sequencing of 18 urea-utilizing Vibrio strains isolated from coral www.nature.com/articles/s41...
Within-host genetic diversity of pneumococcal serotype 3 during one-year prolonged carriage in a healthy adult www.nature.com/articles/s41...
Within-host genetic diversity of pneumococcal serotype 3 during one-year prolonged carriage in a healthy adult - Nature Communications
In this work, authors tracked a pneumococcal serotype 3 strain persisting for a year in a healthy adult, revealing limited genetic change but stable multidrug resistance and features linked to vaccine escape.
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October 8, 2025 at 6:43 AM
Within-host genetic diversity of pneumococcal serotype 3 during one-year prolonged carriage in a healthy adult www.nature.com/articles/s41...
A genomic view of the bacterial family Endozoicomonadaceae in marine symbioses www.nature.com/articles/s42...
A genomic view of the bacterial family Endozoicomonadaceae in marine symbioses - Communications Biology
This review explores the genomic diversity, ecology, and functional potential of the bacterial family Endozoicomonadaceae in marine symbioses, highlighting their mutualistic to parasitic spectrum and key gaps to be addressed in future research.
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October 3, 2025 at 3:25 PM
A genomic view of the bacterial family Endozoicomonadaceae in marine symbioses www.nature.com/articles/s42...
Elucidating the role of group A Streptococcus genomics and pharyngeal microbiota in acute paediatric pharyngitis www.nature.com/articles/s41...
Elucidating the role of group A Streptococcus genomics and pharyngeal microbiota in acute paediatric pharyngitis - Scientific Reports
Scientific Reports - Elucidating the role of group A Streptococcus genomics and pharyngeal microbiota in acute paediatric pharyngitis
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September 30, 2025 at 12:31 PM
Elucidating the role of group A Streptococcus genomics and pharyngeal microbiota in acute paediatric pharyngitis www.nature.com/articles/s41...
Combined genomic and phenomic analyses reveals multifunctionality of Paenibacillus polymyxa K16 for plant’s nutrition, growth and health www.nature.com/articles/s41...
Combined genomic and phenomic analyses reveals multifunctionality of Paenibacillus polymyxa K16 for plant’s nutrition, growth and health - Scientific Reports
Scientific Reports - Combined genomic and phenomic analyses reveals multifunctionality of Paenibacillus polymyxa K16 for plant’s nutrition, growth and health
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September 30, 2025 at 12:31 PM
Combined genomic and phenomic analyses reveals multifunctionality of Paenibacillus polymyxa K16 for plant’s nutrition, growth and health www.nature.com/articles/s41...
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap www.nature.com/articles/s41...
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap - Nature Biotechnology
LexicMap uses a fixed set of probes to efficiently query gene sequences for fast and low-memory alignment.
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September 11, 2025 at 4:01 AM
Efficient sequence alignment against millions of prokaryotic genomes with LexicMap www.nature.com/articles/s41...
Determination of the prevalence of hypervirulent Klebsiella pneumoniae strains in Northeast Iran, Mashhad www.nature.com/articles/s41...
Determination of the prevalence of hypervirulent Klebsiella pneumoniae strains in Northeast Iran, Mashhad - Scientific Reports
Scientific Reports - Determination of the prevalence of hypervirulent Klebsiella pneumoniae strains in Northeast Iran, Mashhad
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August 27, 2025 at 6:21 PM
Determination of the prevalence of hypervirulent Klebsiella pneumoniae strains in Northeast Iran, Mashhad www.nature.com/articles/s41...
Amycolatopsis cyclosori sp. nov., isolated from the rhizosphere soil of Cyclosorus parasiticus www.nature.com/articles/s41...
Amycolatopsis cyclosori sp. nov., isolated from the rhizosphere soil of Cyclosorus parasiticus - The Journal of Antibiotics
The Journal of Antibiotics - Amycolatopsis cyclosori sp. nov., isolated from the rhizosphere soil of Cyclosorus parasiticus
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August 27, 2025 at 12:05 PM
Amycolatopsis cyclosori sp. nov., isolated from the rhizosphere soil of Cyclosorus parasiticus www.nature.com/articles/s41...
Bringing the uncultivated microbial majority of freshwater ecosystems into culture www.nature.com/articles/s41...
Bringing the uncultivated microbial majority of freshwater ecosystems into culture - Nature Communications
A large fraction of aquatic bacteria remains uncultured. Here, the authors cultivated 627 strains of abundant freshwater bacteria from 14 European lakes, thus generating a collection that includes man...
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August 27, 2025 at 12:03 PM
Bringing the uncultivated microbial majority of freshwater ecosystems into culture www.nature.com/articles/s41...
Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium www.nature.com/articles/s41...
Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium - Nature Microbiology
Isolates and metagenome-assembled genomes from a global survey show quasi-endemic and cosmopolitan lineages of SAR11-IIIb, with patterns driven by temperature and latitude.
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August 15, 2025 at 11:13 AM
Ecophysiology and global dispersal of the freshwater SAR11-IIIb genus Fontibacterium www.nature.com/articles/s41...
Ecological connectivity of genomic markers of antimicrobial resistance in Escherichia coli in Hong Kong www.nature.com/articles/s41...
Ecological connectivity of genomic markers of antimicrobial resistance in Escherichia coli in Hong Kong - Nature Communications
E. coli is common in humans, animals and the environment but the extent of circulation between ecological niches is unclear. Here, the authors sample ~1,000 E. coli strains from different urban aquati...
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August 9, 2025 at 8:25 AM
Ecological connectivity of genomic markers of antimicrobial resistance in Escherichia coli in Hong Kong www.nature.com/articles/s41...
Genome-based reclassification of Micromonospora veneta Kaewkla et al. 2022 as a later heterotypic synonym of Micromonospora coerulea Jensen 1932 (Approved lists 1980) www.nature.com/articles/s41...
Genome-based reclassification of Micromonospora veneta Kaewkla et al. 2022 as a later heterotypic synonym of Micromonospora coerulea Jensen 1932 (Approved lists 1980) - Scientific Reports
Scientific Reports - Genome-based reclassification of Micromonospora veneta Kaewkla et al. 2022 as a later heterotypic synonym of Micromonospora coerulea Jensen 1932 (Approved lists 1980)
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July 28, 2025 at 1:48 PM
Genome-based reclassification of Micromonospora veneta Kaewkla et al. 2022 as a later heterotypic synonym of Micromonospora coerulea Jensen 1932 (Approved lists 1980) www.nature.com/articles/s41...
Pan-genus analysis and typing of antimicrobial resistance plasmids in Acinetobacter www.nature.com/articles/s44...
Pan-genus analysis and typing of antimicrobial resistance plasmids in Acinetobacter - npj Antimicrobials and Resistance
npj Antimicrobials and Resistance - Pan-genus analysis and typing of antimicrobial resistance plasmids in Acinetobacter
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July 22, 2025 at 8:22 AM
Pan-genus analysis and typing of antimicrobial resistance plasmids in Acinetobacter www.nature.com/articles/s44...
Global dissemination of npmA mediated pan-aminoglycoside resistance via a mobile genetic element in Gram-positive bacteria www.nature.com/articles/s41...
Global dissemination of npmA mediated pan-aminoglycoside resistance via a mobile genetic element in Gram-positive bacteria - Nature Communications
The authors investigate the distribution of the aminoglycoside resistance gene npmA in Gram-positive bacteria via a mobile genetic element, highlighting its global presence and cross-species transfer ...
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July 17, 2025 at 11:27 AM
Global dissemination of npmA mediated pan-aminoglycoside resistance via a mobile genetic element in Gram-positive bacteria www.nature.com/articles/s41...
Genomes of 211 Actinomycete Strains from Diverse Environments www.nature.com/articles/s41...
Genomes of 211 Actinomycete Strains from Diverse Environments - Scientific Data
Scientific Data - Genomes of 211 Actinomycete Strains from Diverse Environments
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July 15, 2025 at 7:11 AM
Genomes of 211 Actinomycete Strains from Diverse Environments www.nature.com/articles/s41...
Molecular and genomic insights into multidrug-resistant (MDR) and extensively drug-resistant (XDR) Pseudomonas aeruginosa causing burn wound infections in Bangladesh www.nature.com/articles/s41...
Molecular and genomic insights into multidrug-resistant (MDR) and extensively drug-resistant (XDR) Pseudomonas aeruginosa causing burn wound infections in Bangladesh - Scientific Reports
Scientific Reports - Molecular and genomic insights into multidrug-resistant (MDR) and extensively drug-resistant (XDR) Pseudomonas aeruginosa causing burn wound infections in Bangladesh
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July 15, 2025 at 7:11 AM
Molecular and genomic insights into multidrug-resistant (MDR) and extensively drug-resistant (XDR) Pseudomonas aeruginosa causing burn wound infections in Bangladesh www.nature.com/articles/s41...
Streptomyces maremycinicus sp. nov. and its secondary metabolite-biosynthetic gene clusters www.nature.com/articles/s41...
Streptomyces maremycinicus sp. nov. and its secondary metabolite-biosynthetic gene clusters - The Journal of Antibiotics
The Journal of Antibiotics - Streptomyces maremycinicus sp. nov. and its secondary metabolite-biosynthetic gene clusters
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July 9, 2025 at 12:22 PM
Streptomyces maremycinicus sp. nov. and its secondary metabolite-biosynthetic gene clusters www.nature.com/articles/s41...
Global pneumococcal sequence cluster lineage for invasive pneumococcal isolates in Denmark from summer 2019 to 2023 www.nature.com/articles/s41...
Global pneumococcal sequence cluster lineage for invasive pneumococcal isolates in Denmark from summer 2019 to 2023 - Scientific Reports
Scientific Reports - Global pneumococcal sequence cluster lineage for invasive pneumococcal isolates in Denmark from summer 2019 to 2023
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July 9, 2025 at 10:43 AM
Global pneumococcal sequence cluster lineage for invasive pneumococcal isolates in Denmark from summer 2019 to 2023 www.nature.com/articles/s41...
Halomonas sp. MC140, a polyhydroxyalkanoate (PHA) producer isolated from the Arctic environment www.nature.com/articles/s41...
Halomonas sp. MC140, a polyhydroxyalkanoate (PHA) producer isolated from the Arctic environment - Scientific Reports
Scientific Reports - Halomonas sp. MC140, a polyhydroxyalkanoate (PHA) producer isolated from the Arctic environment
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July 3, 2025 at 9:24 PM
Halomonas sp. MC140, a polyhydroxyalkanoate (PHA) producer isolated from the Arctic environment www.nature.com/articles/s41...
Universal rules govern plasmid copy number www.nature.com/articles/s41...
Universal rules govern plasmid copy number - Nature Communications
Plasmids exhibit a broad range of sizes and copies per cell, and these two parameters appear to be negatively correlated. Here, Ramiro-Martínez et al. analyse the copy number of thousands of diverse b...
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July 2, 2025 at 11:37 AM
Universal rules govern plasmid copy number www.nature.com/articles/s41...
Scaling laws of bacterial and archaeal plasmids www.nature.com/articles/s41...
Scaling laws of bacterial and archaeal plasmids - Nature Communications
The capacity of a plasmid to express genes is constrained by parameters such as its length and copy number. Here, Maddamsetti et al. present a computational method that enables rapid and accurate dete...
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July 2, 2025 at 11:35 AM
Scaling laws of bacterial and archaeal plasmids www.nature.com/articles/s41...