Antti Karkman
@anttikarkman.bsky.social
University lecturer in microbial bionformatics at University of Helsinki
(@helsinki.fi)
Co-founder of Aluke (www.aluke.fi)
(he/him)
(@helsinki.fi)
Co-founder of Aluke (www.aluke.fi)
(he/him)
The abstract deadline for Nordic AMR Conference 2026 has been extended. Also see the list of keynote speakers.
More information at www.helsinki.fi/en/conferenc...
More information at www.helsinki.fi/en/conferenc...
November 7, 2025 at 8:37 AM
The abstract deadline for Nordic AMR Conference 2026 has been extended. Also see the list of keynote speakers.
More information at www.helsinki.fi/en/conferenc...
More information at www.helsinki.fi/en/conferenc...
This year the sequencing was not perfect, but we got one circular (hopefully complete) genome.
On Wednesday we continue with more in depth annotations and will learn more.
On Wednesday we continue with more in depth annotations and will learn more.
November 3, 2025 at 1:13 PM
This year the sequencing was not perfect, but we got one circular (hopefully complete) genome.
On Wednesday we continue with more in depth annotations and will learn more.
On Wednesday we continue with more in depth annotations and will learn more.
En voisi olla enempää samaa mieltä.
October 30, 2025 at 6:31 PM
En voisi olla enempää samaa mieltä.
On Wednesday the student got to whole genome sequence their isolates on the exploratory laboratory course (studies.helsinki.fi/courses/cour...).
Next weeks we will analyse the data and try to assemble as many complete genomes as possible. Thanks @nanoporetech.com for the support.
Next weeks we will analyse the data and try to assemble as many complete genomes as possible. Thanks @nanoporetech.com for the support.
October 24, 2025 at 7:16 AM
On Wednesday the student got to whole genome sequence their isolates on the exploratory laboratory course (studies.helsinki.fi/courses/cour...).
Next weeks we will analyse the data and try to assemble as many complete genomes as possible. Thanks @nanoporetech.com for the support.
Next weeks we will analyse the data and try to assemble as many complete genomes as possible. Thanks @nanoporetech.com for the support.
The perfect location for writing an application to the Water4All call.
October 3, 2025 at 10:53 AM
The perfect location for writing an application to the Water4All call.
Time for the 2024 edition of the ”Exploratory microbial research, lab course” and whole genome sequencing of the students own unknown strains. This year we were supported by Oxford Nanopore, so thank you for this.
October 25, 2024 at 9:02 AM
Time for the 2024 edition of the ”Exploratory microbial research, lab course” and whole genome sequencing of the students own unknown strains. This year we were supported by Oxford Nanopore, so thank you for this.
The next EDAR will be organized in Brisbane, Australia in May 2026.
May 31, 2024 at 4:35 PM
The next EDAR will be organized in Brisbane, Australia in May 2026.
First time being the first at work.
January 14, 2024 at 7:44 AM
First time being the first at work.
Lisää lunta, muuten hyvä. #keskuspuisto
December 3, 2023 at 3:58 PM
Lisää lunta, muuten hyvä. #keskuspuisto
Pizza Friday! Sourdough pizzas prepared at the food processing lab (not by me, I only cut one in pieces).
November 3, 2023 at 10:59 AM
Pizza Friday! Sourdough pizzas prepared at the food processing lab (not by me, I only cut one in pieces).
