Andy
@andy-compbio.bsky.social
Bioinformatics / proteomics / mass spec
Reposted by Andy
🧬 We're looking for an intern for summer 2025 to work with me and the data science and engineering team at Talus Bio!
Apply here 👇
talusbio.applicantpro.com/jobs/3551253
Apply here 👇
talusbio.applicantpro.com/jobs/3551253
Summer Intern, Data Science - Seattle, WA
Note: To apply for this internship, you MUST submit both a cover letter and a resume, both in a single PDF (Word and .doc files will not be accepted)!
Talus Bioscience is seeking highly motivated sum...
talusbio.applicantpro.com
November 11, 2024 at 11:14 PM
🧬 We're looking for an intern for summer 2025 to work with me and the data science and engineering team at Talus Bio!
Apply here 👇
talusbio.applicantpro.com/jobs/3551253
Apply here 👇
talusbio.applicantpro.com/jobs/3551253
Reposted by Andy
Lots of people use machine learning to post process mass spectrometry database search results. But why not just use ML as the score function in database search? Turns out it works great! www.biorxiv.org/content/10.1...
A learned score function improves the power of mass spectrometry database search
bioRxiv - the preprint server for biology, operated by Cold Spring Harbor Laboratory, a research and educational institution
www.biorxiv.org
January 30, 2024 at 10:35 PM
Lots of people use machine learning to post process mass spectrometry database search results. But why not just use ML as the score function in database search? Turns out it works great! www.biorxiv.org/content/10.1...
Reposted by Andy
I'm compiling a page of proteomics references that people forget or put up incorrectly. ProteomeXchange, FragPipe, SP3, S-Trap are all ones I see left out or wrong (or not what the resource owners asks you to use) are there others?
November 10, 2023 at 11:57 AM
I'm compiling a page of proteomics references that people forget or put up incorrectly. ProteomeXchange, FragPipe, SP3, S-Trap are all ones I see left out or wrong (or not what the resource owners asks you to use) are there others?
Reposted by Andy
New faculty position available for computational biology in the department of Genome Sciences at the University of Washington. Our department spans both Genomics and Proteomics. apply.interfolio.com/135108
Apply - Interfolio
{{$ctrl.$state.data.pageTitle}} - Apply - Interfolio
apply.interfolio.com
November 1, 2023 at 6:11 AM
New faculty position available for computational biology in the department of Genome Sciences at the University of Washington. Our department spans both Genomics and Proteomics. apply.interfolio.com/135108
Reposted by Andy
Summary of my quant proteomics #Asilomar2023 talk:
1. sample space >>> throughput(e.g. chemical compounds in drug screening, cell types in biology, etc)
2. Interesting things are typically rare
3. Followup work will filter out false positives, but you can never recover a false negative
1. sample space >>> throughput(e.g. chemical compounds in drug screening, cell types in biology, etc)
2. Interesting things are typically rare
3. Followup work will filter out false positives, but you can never recover a false negative
October 15, 2023 at 5:57 PM
Summary of my quant proteomics #Asilomar2023 talk:
1. sample space >>> throughput(e.g. chemical compounds in drug screening, cell types in biology, etc)
2. Interesting things are typically rare
3. Followup work will filter out false positives, but you can never recover a false negative
1. sample space >>> throughput(e.g. chemical compounds in drug screening, cell types in biology, etc)
2. Interesting things are typically rare
3. Followup work will filter out false positives, but you can never recover a false negative
Reposted by Andy
Themes I'm picking up on at Asilomar 2023 #TeamMassSpec conference 🧵
October 14, 2023 at 6:00 PM
Themes I'm picking up on at Asilomar 2023 #TeamMassSpec conference 🧵
Reposted by Andy
Sorry not sorry, but another US HUPO 2024 related post: we are looking for nominations for the four annual awards (see link). The winner gets a lecture (among other things), so nominate someone you want to see speak. It's easy and fun, and will make Portland even more interesting!
US HUPO - Awards
www.ushupo.org
October 12, 2023 at 1:37 PM
Sorry not sorry, but another US HUPO 2024 related post: we are looking for nominations for the four annual awards (see link). The winner gets a lecture (among other things), so nominate someone you want to see speak. It's easy and fun, and will make Portland even more interesting!
Alright time for a preprint announcement. In this manuscript we introduce the use of hypernetworks for the purpose of visualizing and analyzing metabolomics data. And before anyone asks, yes, this is the first time I have worked with metabolomics data before. (1/4)
Introducing Molecular Hypernetworks forDiscovery in MultidimensionalMetabolomics Data https://www.biorxiv.org/content/10.1101/2023.09.29.560191v1
Introducing Molecular Hypernetworks forDiscovery in MultidimensionalMetabolomics Data https://www.biorxiv.org/content/10.1101/2023.09.29.560191v1
Orthogonal separations of data from high-resolution mass spectrometry can provide insight into sampl
www.biorxiv.org
October 4, 2023 at 6:14 PM
Alright time for a preprint announcement. In this manuscript we introduce the use of hypernetworks for the purpose of visualizing and analyzing metabolomics data. And before anyone asks, yes, this is the first time I have worked with metabolomics data before. (1/4)
*knocks on door*
Hey everyone, made it here. Time to figure out how this place works.
Hey everyone, made it here. Time to figure out how this place works.
September 29, 2023 at 10:55 PM
*knocks on door*
Hey everyone, made it here. Time to figure out how this place works.
Hey everyone, made it here. Time to figure out how this place works.