This work left us with another thought-provoking observation: the way these activation energies correlate is *not* evocative of an aboslute upper limit to the adaptation of microbial growth to high temperature... If it exists, such an absolute limit has to be caused by some other process!
This work left us with another thought-provoking observation: the way these activation energies correlate is *not* evocative of an aboslute upper limit to the adaptation of microbial growth to high temperature... If it exists, such an absolute limit has to be caused by some other process!
the observed correlation between the maximal and optimal growth temperature which seems to hold universally in microbes. Such a pattern is expected if activation energies of both constructive and destructive processes increase with growth temperature while metabolic scaling does not.
the observed correlation between the maximal and optimal growth temperature which seems to hold universally in microbes. Such a pattern is expected if activation energies of both constructive and destructive processes increase with growth temperature while metabolic scaling does not.
This scaling remains relatively constant over different temperatures, signaling that it may not be as important a determinant of maximal growth temperature as activation energies. Together with the correlation found among activation energies, this sheds light on a thought provoking pattern:
This scaling remains relatively constant over different temperatures, signaling that it may not be as important a determinant of maximal growth temperature as activation energies. Together with the correlation found among activation energies, this sheds light on a thought provoking pattern:
the fraction of cellular molecules which participate to constructive processes (e.g. metabolic machinery) and those which incur maintenance costs (all of them)! Treating cell growth as the sum of two single-rate functions is fine enough as long as we account for this scaling.
the fraction of cellular molecules which participate to constructive processes (e.g. metabolic machinery) and those which incur maintenance costs (all of them)! Treating cell growth as the sum of two single-rate functions is fine enough as long as we account for this scaling.
Our analysis shows that such is likely not the case, i.e. that there is no analogy for enthalpy-entropy compensation at the scale of the entire cell (while it is still a thing at the molecular scale). Instead, this artifact disappears when the model accounts for scaling differences between
Our analysis shows that such is likely not the case, i.e. that there is no analogy for enthalpy-entropy compensation at the scale of the entire cell (while it is still a thing at the molecular scale). Instead, this artifact disappears when the model accounts for scaling differences between
Likewise, a phenomenon called the 'enthalpy-entropy' compensation was thought to apply at the cell scale within the family of models that we study, explaining some observed correlations within parameters of the original formulation of the model by Hinshelwood in 1946.
Likewise, a phenomenon called the 'enthalpy-entropy' compensation was thought to apply at the cell scale within the family of models that we study, explaining some observed correlations within parameters of the original formulation of the model by Hinshelwood in 1946.
it could also be caused by a trade-off directly at the cellular level e.g. whereby adaptation at high temperature is mediated by allocation of metabolic power to synthesis of stress-response proteins in detriment of synthesis of other functional proteins.
it could also be caused by a trade-off directly at the cellular level e.g. whereby adaptation at high temperature is mediated by allocation of metabolic power to synthesis of stress-response proteins in detriment of synthesis of other functional proteins.
Our model being a coarse-grained description of cellular processes, and not explicitly of enzymatic rates, our findings cannot confirm the existence and relevance of this molecular-scale tradeoff. While such a molecular trade-off could cause this pattern at the cell level,
Our model being a coarse-grained description of cellular processes, and not explicitly of enzymatic rates, our findings cannot confirm the existence and relevance of this molecular-scale tradeoff. While such a molecular trade-off could cause this pattern at the cell level,
-surprisingly, the rate of 'constructive' processes is also inhibited in high temperature growing archaea. This could be the manifestation of a longstanding hypothesis: the enzymatic activity-stability tradeoff, which states that increasing enzyme stability decreases activity.
-surprisingly, the rate of 'constructive' processes is also inhibited in high temperature growing archaea. This could be the manifestation of a longstanding hypothesis: the enzymatic activity-stability tradeoff, which states that increasing enzyme stability decreases activity.
Linking empirical optimal and maximal growth temperatures to parameter values in Archaea showed that
-organisms growing at higher temperatures have more inhibited rates for destructive processes, which makes perfect sense in the context of adaptation to high temperatures
Linking empirical optimal and maximal growth temperatures to parameter values in Archaea showed that
-organisms growing at higher temperatures have more inhibited rates for destructive processes, which makes perfect sense in the context of adaptation to high temperatures
We created a basic version of this family of models, suitable for parameter inference using data where the growth rate of an organism is reported at various temperatures. This allowed us to turn a database of measured growth rates into one of estimated parameter values.
We created a basic version of this family of models, suitable for parameter inference using data where the growth rate of an organism is reported at various temperatures. This allowed us to turn a database of measured growth rates into one of estimated parameter values.
Often, microbial growth is represented as the sum of a positive ("constructive") and negative ("destructive") temperature-dependent rate, reproducing the typical asymmetrical shape of microbial thermal growth curves. How does adaptation change the parameters defining these terms?
Often, microbial growth is represented as the sum of a positive ("constructive") and negative ("destructive") temperature-dependent rate, reproducing the typical asymmetrical shape of microbial thermal growth curves. How does adaptation change the parameters defining these terms?
S Mazevet, D Apai @danielapai.bsky.social , B Sauterey, R Ferriere @regisferriere.bsky.social
S Mazevet, D Apai @danielapai.bsky.social , B Sauterey, R Ferriere @regisferriere.bsky.social