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Jean-Yves Tinevez

@jytinevez.bsky.social

2K followers 680 following 240 posts

Research engineer and core facility manager at the Institut Pasteur https://research.pasteur.fr/en/team/image-analysis-hub/ Everything #TrackMate #Mastodon-sc (the tool to track lineages in microscopy videos, not the social networks etc). Views are my own .. more

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Jean-Yves Tinevez @jytinevez.bsky.social · 9d

Job alert!

We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks?

See also on the forum:
forum.image.sc/t/research-e...

Research engineer in Bioimage Analysis for the researchers of the inIdEx FORMULA

Hi all We are looking for a bioimage analysis to work in an image analysis core facility in beautiful Paris. Can I ask you to share this opportunity with your networks? The position is in the Instit...

Reposted by Jean-Yves Tinévez

Pedro Escoll @pescoll.bsky.social · 14h

New paper finally out on @natcomms.nature.com! Led by first author Maria Dramé with the collaboration of Francisco Garcia, @cbuch.bsky.social and @jytinevez.bsky.social at @pasteur.fr. Early mitochondrial signals in single human macrophages predict later Legionella replication. Link + details👇🧵

Reposted by Jean-Yves Tinévez

Institut Pasteur | 130 years of biomedical research @pasteur.fr · 1d

Six Pasteur scientists win 2025 L’Oréal-UNESCO Young Talents! 🌟 Yolène: Caribbean plants vs dengue mozzies; Leah: gastruloid biophysics; Marion: cancer immunotherapy; Eulalie: menstruation genetics; Sabrina: fixing hearing nerve; Marie: TB & sarcoid immunity. #WomenInScience

Jean-Yves Tinevez @jytinevez.bsky.social · 3d

Thank you so much @globias.bsky.social , @bethcimini.bsky.social & Christa Walther!

During the foundation phase of the association, several work groups are developing the different aspects of the CZI grant and the main cornerstones of the project. Each work group is led by a steering...

www.globias.org

Jean-Yves Tinevez @jytinevez.bsky.social · 3d

I am slow to start but I discuss how we are organized, what are our missions and activities, and how the former protect the latter. I also give pointers on how to estimate capacity and demand and match analysts to them.

I hope you enjoy it. I did.

Jean-Yves Tinevez @jytinevez.bsky.social · 3d

Hi all. This is the recording of the online seminar I gave following the kind invitation of #GLOBIAS.

I share what we have learned delivering #BioimageAnalysis services in the IAH core facility of the @institutpasteur.bsky.social

research.pasteur.fr/en/team/imag...
⬇️

Reposted by Jean-Yves Tinévez

Stephan Preibisch @preibischs.bsky.social · 5d

The connectome of the entire male Drosophila central nervous system is out!! Acquired using FIB-SEM @ 8x8x8nm, we aligned 7.5 mio 2D images aligned into one seamless 3D volume, which was used to segment & proofread neurons and synapses. @hhmijanelia.bsky.social

www.biorxiv.org/content/10.1...

Reposted by Jean-Yves Tinévez

Institut Pasteur Education @pasteuredu.bsky.social · 6d

📢Apply now – Mother-Child Dyad: Current Evidence in a Global Perspective Pasteur Course

This 1 week intensive course provides an up-to-date overview of maternal & child health in a global context, with a focus on the first 1,000 days of life, a critical period for lifelong health

👉 bit.ly/46ZKZpj

Reposted by Jean-Yves Tinévez

Institut Pasteur | 130 years of biomedical research @pasteur.fr · 7d

Pour le Pasteurdon, on a donné des appareils photos aux chercheurs 📸👩‍🔬
Voici ce qu’ils ont capturé ! 
#pasteurdon

Reposted by Jean-Yves Tinévez

DrLachie @drlachie.bsky.social · 9d

Hey microscopists! On behalf of @ausbias.org I'd like to invite you to fill in our inaugural survey of how you perform and interface with bioimage analysis in your work! Help shape our society, and help us understand how we can best serve the wider microscopy community! ausbias.org/survey-2025/

Reposted by Jean-Yves Tinévez

Morgan Schwartz @msschwartz21.bsky.social · 9d

#geff v1 is released! 🎉 GEFF is a zarr-based Graph Exchange File Format with special support for tracking applications in Python and Java. Thank you to all the amazing developers who contributed at the Janelia 2025 Trackathon! liveimagetrackingtools.org/geff/

Jean-Yves Tinevez @jytinevez.bsky.social · 9d

Do not hesitate to contact me to have more information about the position, what it’s like to work in Pasteur, in a core ... Also, do not hesitate to contact anyone from the team (research.pasteur.fr/en/team/imag...) to know what it’s like to work in the team .

It’s going to be great; apply.

Image Analysis Hub - Research

The Image Analysis Hub is an open-access / equal-access core facility committed to sharing bioimage analysis services expertise with the scientific community. What we do The IAH works by collaborating...

research.pasteur.fr

Jean-Yves Tinevez @jytinevez.bsky.social · 9d

But as always: Do you feel like addressing fantastic questions in Life-Sciences and develop the tools to do so? Please apply! Or please transfer this announcement to your network if you know a candidate.

Image Analysis Hub - Research

The Image Analysis Hub is an open-access / equal-access core facility committed to sharing bioimage analysis services expertise with the scientific community. What we do The IAH works by collaborating...

research.pasteur.fr

Jean-Yves Tinevez @jytinevez.bsky.social · 9d

The position is in the Institut @pasteur.fr, in the Image Analysis Hub (with me), but is made to support several institutes including Pasteur, the Institut Jacques Monod, … I give all the details in the application below. You can also download the flyer here:

dl.pasteur.fr/fop/sDtotzGh...

Jean-Yves Tinevez @jytinevez.bsky.social · 9d

Seul exemple que je connaisse :

en.wikipedia.org/wiki/Fast_in...

Fast inverse square root - Wikipedia

en.wikipedia.org

Reposted by Jean-Yves Tinévez

CNRS @cnrs.fr · 9d

#ExpertsCNRS 🔎 Journalistes, en lien avec le #NobelPrize de physique, le bureau de presse du @cnrs.fr vous propose des scientifiques pouvant vous éclairer sur les travaux des lauréats.
Si vous êtes intéressés :
📞 📩 cnrs.fr/fr/contacts

Reposted by Jean-Yves Tinévez

CNRS @cnrs.fr · 10d

#ExpertsCNRS 🔎 Journalistes, en lien avec le #NobelPrize de médecine, le bureau de presse du @cnrs.fr vous propose des scientifiques pouvant vous éclairer sur les travaux des lauréats.

Si vous êtes intéressés :
📞📩 cnrs.fr/fr/contacts

Reposted by Mart Krupovìč, Jean-Yves Tinévez

Thibaut Brunet @thibautbrunet.bsky.social · 11d

Latest from ours: www.cell.com/cell-reports...

This is two stories in one: a case study/cautionary tale on developing genetic tools in new organisms, and the first hint at a gene regulatory network for choanoflagellate multicellular development (which turn out to involve a Hippo/YAP/ECM loop!) A 🧵

Jean-Yves Tinevez @jytinevez.bsky.social · 12d

What one should I watch to have a meaningful ending?

Reposted by Jean-Yves Tinévez

GdR ImaBio @gdrimabio.bsky.social · 13d

🔬For 22 years, we have been organizing #Mifobio "Functional Microscopy for Biology" the @cnrs.fr thematic school.

🎓 Courses, Seminars, Round Tables, Workshops. The overall theme concerns #biological_imaging in its most interdisciplinary aspects.

👉 Program: imabio-cnrs.fr

#GDRImaBio #Mifobio2025

Reposted by Jean-Yves Tinévez

BioImaging North America @bioimagingna.bsky.social · 13d

#HappyFluorescenceFriday!

#microscopycommunity- Join us for Image Analysis Journeys from Academia to Industry featuring Caroline Miller, Kevin Murphy, Jian Wei Tay, Erick Ratamero, Sara McArdle, and Sripad Ram. Nov 6, 1:00 to 2:30 pm ET

More info & registration: buff.ly/eFUU6up

Reposted by Jean-Yves Tinévez, Olivier Sandre

Peter O'Toole @yorkbioimaging.bsky.social · 13d

Happy #FluorescenceFriday. Christophe Leterrier⭐in #TheMicroscopists and reflects on the
make-or-break moment at the end of his postdoc
when he came close to leaving academia before securing his CNRS position
and how these experiences shape the way he mentors others.
Stream: bit.ly/microscopist...

The Microscopists | Christophe Leterrier (CNRS & Aix-Marseille Université)

This time on The Microscopists, we're joined by Christophe Leterrier, team leader at NeuroCyto in Marseille and director of a Nikon Center of Excellence for super-resolution microscopy.Christophe r...

Jean-Yves Tinevez @jytinevez.bsky.social · 13d

Do you want to work with Michalis and us on a fun and ambitious LSFM, tracking and gamification project?
Apply!!

Michalis Averof @michalis-averof.bsky.social · 13d

Cool collaborations on light sheet microscopy @huiskenlab.bsky.social, cellular barcoding @mgrillo.bsky.social, AI-based cell tracking @jytinevez.bsky.social, and citizen science through video game for cell tracking @rebelpixel.fr

see www.averof-lab.org/pages/tracman

3/3

Reposted by Jean-Yves Tinévez

Michalis Averof @michalis-averof.bsky.social · 13d

Cool collaborations on light sheet microscopy @huiskenlab.bsky.social, cellular barcoding @mgrillo.bsky.social, AI-based cell tracking @jytinevez.bsky.social, and citizen science through video game for cell tracking @rebelpixel.fr

see www.averof-lab.org/pages/tracman

3/3

Reposted by Jean-Yves Tinévez

Michalis Averof @michalis-averof.bsky.social · 13d

Postdoc will:
* Βe trained in live imaging & transgenic approach
* Generate fluorescent markers for sensory organ cell types (neurons, setae, support cells & glia)
* Develop recombinase-based cell barcoding
* Use barcoding, live imaging & cell tracking to identify regenerative progenitors

2/3

Reposted by Jean-Yves Tinévez

eurobioimaging.bsky.social @eurobioimaging.bsky.social · 14d

Great to see Node staff, #i4A training grantee hernanmn.bsky.social & others at the EMBO "Advanced Methods in BioImage Analysis" course! @ahklemm.bsky.social @perrinegil.bsky.social @jytinevez.bsky.social @france-bioimaging.bsky.social @iemcas.bsky.social
More🔽
www.eurobioimaging.eu/news/success...

Jean-Yves Tinevez @jytinevez.bsky.social · 15d

Improving the AiryScan detector?

Reposted by Jean-Yves Tinévez

Ignacio Arganda-Carreras @iarganda.bsky.social · 16d

📣 We’re hiring, please RT! Fully funded 4-year PhD position in our CVPD group at @informatikaehu.bsky.social!

Research at the intersection of AI, deep learning & bioimage analysis. 🧠🔬

📅 Applications open Oct 6 (deadline: ~Oct 27)
📍 San Sebastian, Spain.
👉 cvpd.github.io/post/2025-09...

📢 Open 4-year PhD Position in Deep Learning for Bioimage Analysis! | CVPD Research group

The Computer Vision and Pattern Discovery (CVPD) group at the University of the Basque Country (UPV/EHU) is offering a fully funded 4-year PhD position within the recently awarded project TOSBI: Towar...

Reposted by Jean-Yves Tinévez

ScaDS.AI Dresden/Leipzig @scadsai.bsky.social · 16d

@scadsai.bsky.social training coordinator @haesleinhuepf.bsky.social provided insights into his professional career in the podcast series “The Microscopists.”
If you want to know why he'll never ask biologists for better images again, click here:
🍍 themicroscopists.bitesizebio.com/episodes/rob...

Reposted by Jean-Yves Tinévez

Institut Pasteur Education @pasteuredu.bsky.social · 17d

Soutenez l'initiative pour lutter contre la précarité des jeunes scientifiques

Objectif : proposer chaque année 95 logements accessibles à des jeunes chercheur.se.s.

RDV ici ➡️ faireundon.pasteur.fr
➡️ À l’étape Affectation, choisissez Autre et indiquez :
CENTRE ENSEIGNEMENT – Un toit pour étudier