Robin Anger
@robinanger.bsky.social
Research Engineer (PhD) | Microbiologist & Microscopist
Cryo-EM & Cryo-CLEM Specialist 🔬
Working at European Institute of Chemistry & Biology, France 🇫🇷
https://www.iecb.u-bordeaux.fr/
#cryoEM #cryoET #CryoCLEM #microsky
Cryo-EM & Cryo-CLEM Specialist 🔬
Working at European Institute of Chemistry & Biology, France 🇫🇷
https://www.iecb.u-bordeaux.fr/
#cryoEM #cryoET #CryoCLEM #microsky
Reposted by Robin Anger
Very happy to share our work on lipopolysaccharide assembly by the Lpt complex, published today in @natcomms.nature.com
Fantastic collaboration with @raffaeleieva.bsky.social l and t @pstansfeld.bsky.social
Congrats to all authors, especially Haoxiang, Axel & Violette
🔗 doi.org/10.1038/s414...
Fantastic collaboration with @raffaeleieva.bsky.social l and t @pstansfeld.bsky.social
Congrats to all authors, especially Haoxiang, Axel & Violette
🔗 doi.org/10.1038/s414...
Structural basis of lipopolysaccharide assembly by the outer membrane translocon holo-complex - Nature Communications
The asymmetric distribution of lipopolysaccharide (LPS) on the surface of the bacterial outer membrane is essential and crucial for antibiotic resistance. Here, authors characterize the LPS translocon...
doi.org
November 24, 2025 at 3:22 PM
Very happy to share our work on lipopolysaccharide assembly by the Lpt complex, published today in @natcomms.nature.com
Fantastic collaboration with @raffaeleieva.bsky.social l and t @pstansfeld.bsky.social
Congrats to all authors, especially Haoxiang, Axel & Violette
🔗 doi.org/10.1038/s414...
Fantastic collaboration with @raffaeleieva.bsky.social l and t @pstansfeld.bsky.social
Congrats to all authors, especially Haoxiang, Axel & Violette
🔗 doi.org/10.1038/s414...
Reposted by Robin Anger
Our latest T7SS study is now out in Science Advances!
We solved the cryoEM structure of the T7SSb core unit (T7bCU) composed of YukB, YukC, and YukD from Bacillus subtilis, revealing how these components assemble within the secretion machinery.
www.science.org/doi/10.1126/...
We solved the cryoEM structure of the T7SSb core unit (T7bCU) composed of YukB, YukC, and YukD from Bacillus subtilis, revealing how these components assemble within the secretion machinery.
www.science.org/doi/10.1126/...
A ubiquitin-like protein controls assembly of a bacterial type VIIb secretion system
Cryo-EM structure reveals how a ubiquitin-like protein orchestrates assembly of a bacterial weapon system.
www.science.org
November 21, 2025 at 7:05 PM
Our latest T7SS study is now out in Science Advances!
We solved the cryoEM structure of the T7SSb core unit (T7bCU) composed of YukB, YukC, and YukD from Bacillus subtilis, revealing how these components assemble within the secretion machinery.
www.science.org/doi/10.1126/...
We solved the cryoEM structure of the T7SSb core unit (T7bCU) composed of YukB, YukC, and YukD from Bacillus subtilis, revealing how these components assemble within the secretion machinery.
www.science.org/doi/10.1126/...
Reposted by Robin Anger
Happy to announce "Technical Innovations Using #SerialEM: A Community Meeting", a new format of hybrid meeting David Mastronarde and I are organizing in April 2026. For more info, a preliminary list of speakers, pre-registration etc. visit
www.nexperion.net/semcm2026
www.nexperion.net/semcm2026
September 23, 2025 at 10:42 AM
Happy to announce "Technical Innovations Using #SerialEM: A Community Meeting", a new format of hybrid meeting David Mastronarde and I are organizing in April 2026. For more info, a preliminary list of speakers, pre-registration etc. visit
www.nexperion.net/semcm2026
www.nexperion.net/semcm2026
Reposted by Robin Anger
“The Website” is here! It can be intimidating getting into analysis of #CryoET data, and software is evolving all the time👩💻🚀. @phaips.vd.st & @florentwaltz.bsky.social put our lab’s workflows into an online guide. We hope this helps lower the bar to joining #TeamTomo. Feedback much appreciated! 🧪🧶🧬🔬
Hey #TeamTomo,
Ever been in need of a tutorial about the fundamentals of cryo-electron tomography? From preprocessing raw frames to high-res subtomogram averaging?
That's why @florentwaltz.bsky.social and I made this website!
tomoguide.github.io
Follow the thread 1 /🧵
#CryoET #CryoEM 🔬🧪
Ever been in need of a tutorial about the fundamentals of cryo-electron tomography? From preprocessing raw frames to high-res subtomogram averaging?
That's why @florentwaltz.bsky.social and I made this website!
tomoguide.github.io
Follow the thread 1 /🧵
#CryoET #CryoEM 🔬🧪
Welcome to TomoGuide
A step-by-step Cryo-ET guide
tomoguide.github.io
May 7, 2025 at 10:56 AM
“The Website” is here! It can be intimidating getting into analysis of #CryoET data, and software is evolving all the time👩💻🚀. @phaips.vd.st & @florentwaltz.bsky.social put our lab’s workflows into an online guide. We hope this helps lower the bar to joining #TeamTomo. Feedback much appreciated! 🧪🧶🧬🔬
Reposted by Robin Anger
1/5: Over the last few months, I have been working on an update for the #FollowRelionGracefully dashboard, which offers improved real-time job previews for #cryoEM #Relion jobs.
April 27, 2025 at 8:49 PM
1/5: Over the last few months, I have been working on an update for the #FollowRelionGracefully dashboard, which offers improved real-time job previews for #cryoEM #Relion jobs.
Reposted by Robin Anger
🦠🧠 MemBrain update! 🧠🦠
We’ve updated our preprint! It now covers the full MemBrain v2 pipeline for end-to-end membrane analysis in #CryoET: segmentation, particle picking, and spatial statistics.
🔗 Preprint: doi.org/10.1101/2024...
🔗 Code: github.com/CellArchLab/...
🧵(1/6) #TeamTomo
We’ve updated our preprint! It now covers the full MemBrain v2 pipeline for end-to-end membrane analysis in #CryoET: segmentation, particle picking, and spatial statistics.
🔗 Preprint: doi.org/10.1101/2024...
🔗 Code: github.com/CellArchLab/...
🧵(1/6) #TeamTomo
April 25, 2025 at 7:28 AM
🦠🧠 MemBrain update! 🧠🦠
We’ve updated our preprint! It now covers the full MemBrain v2 pipeline for end-to-end membrane analysis in #CryoET: segmentation, particle picking, and spatial statistics.
🔗 Preprint: doi.org/10.1101/2024...
🔗 Code: github.com/CellArchLab/...
🧵(1/6) #TeamTomo
We’ve updated our preprint! It now covers the full MemBrain v2 pipeline for end-to-end membrane analysis in #CryoET: segmentation, particle picking, and spatial statistics.
🔗 Preprint: doi.org/10.1101/2024...
🔗 Code: github.com/CellArchLab/...
🧵(1/6) #TeamTomo
Reposted by Robin Anger
We're on the cover of @science.org this week. Awesome work by @florentwaltz.bsky.social. #CryoET is reaching crazy resolutions inside cells, and this is just the beginning. Fantastic interpretation of the proton motive force by @verenaresch.bsky.social. Always a pleasure making #SciArt with you!🧪🧶🧬🌾
In a new Science study, cryo–electron tomography captures the in-cell architecture of the mitochondrial respiratory chain, illuminating how the coordinated action of molecular machines drives life’s fundamental energy conversion.
Learn more in this week's issue: scim.ag/3FA3Ygq
Learn more in this week's issue: scim.ag/3FA3Ygq
March 20, 2025 at 10:37 PM
We're on the cover of @science.org this week. Awesome work by @florentwaltz.bsky.social. #CryoET is reaching crazy resolutions inside cells, and this is just the beginning. Fantastic interpretation of the proton motive force by @verenaresch.bsky.social. Always a pleasure making #SciArt with you!🧪🧶🧬🌾
Reposted by Robin Anger
ChimeraX can be used to find pockets and cavities in protein structures using the Find Cavities tool or kvfinder command. This feature is available in daily builds from 10 March 2025 or later.
March 17, 2025 at 8:26 PM
ChimeraX can be used to find pockets and cavities in protein structures using the Find Cavities tool or kvfinder command. This feature is available in daily builds from 10 March 2025 or later.
Reposted by Robin Anger
AreTomoLive: Automated reconstruction of comprehensively-corrected and denoised cryo-electron tomograms in real-time and at high throughput www.biorxiv.org/content/10.1101/2025.03.11.642690v1 #cryoem
March 14, 2025 at 7:10 AM
AreTomoLive: Automated reconstruction of comprehensively-corrected and denoised cryo-electron tomograms in real-time and at high throughput www.biorxiv.org/content/10.1101/2025.03.11.642690v1 #cryoem
Reposted by Robin Anger
Stand up for science in Bordeaux
March 7, 2025 at 3:22 PM
Stand up for science in Bordeaux
Reposted by Robin Anger
Cryo-iCLEM: Cryo correlative light and electron microscopy with immersion objectives pubmed.ncbi.nlm.nih.gov/39971020/ #cryoem
February 20, 2025 at 12:46 PM
Cryo-iCLEM: Cryo correlative light and electron microscopy with immersion objectives pubmed.ncbi.nlm.nih.gov/39971020/ #cryoem
Reposted by Robin Anger
🔬Our @haselbachlab.bsky.social with Pavol Harar have developed ‘FakET’!
The new method creates ‘fake’ electron microscopy images to train AI, reducing manual work in particle identification.
Read the full story: www.imp.ac.at/news/article...
@viennabiocenter.bsky.social
#AI #cryoem #microscopy
The new method creates ‘fake’ electron microscopy images to train AI, reducing manual work in particle identification.
Read the full story: www.imp.ac.at/news/article...
@viennabiocenter.bsky.social
#AI #cryoem #microscopy
February 12, 2025 at 4:15 PM
🔬Our @haselbachlab.bsky.social with Pavol Harar have developed ‘FakET’!
The new method creates ‘fake’ electron microscopy images to train AI, reducing manual work in particle identification.
Read the full story: www.imp.ac.at/news/article...
@viennabiocenter.bsky.social
#AI #cryoem #microscopy
The new method creates ‘fake’ electron microscopy images to train AI, reducing manual work in particle identification.
Read the full story: www.imp.ac.at/news/article...
@viennabiocenter.bsky.social
#AI #cryoem #microscopy
Reposted by Robin Anger
Are you using @napari.org or want to learn more? I've curated a list of videos about napari and its uses on YouTube. If I missed a video, please let me know. www.youtube.com/playlist?lis...
napari - scientific image viewer - YouTube
napari (https://napari.org) is a fast, interactive viewer for multi-dimensional images in Python. Napari is a Python library for n-dimensional image visualis...
www.youtube.com
February 13, 2025 at 5:11 PM
Are you using @napari.org or want to learn more? I've curated a list of videos about napari and its uses on YouTube. If I missed a video, please let me know. www.youtube.com/playlist?lis...
Reposted by Robin Anger
After a long journey, Segment Anything for Microscopy is now published in Nature Methods! We significantly improve SAM for interactive and automatic segmentation in light and electron microscopy and build a user-friendly tool.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
February 12, 2025 at 11:41 AM
After a long journey, Segment Anything for Microscopy is now published in Nature Methods! We significantly improve SAM for interactive and automatic segmentation in light and electron microscopy and build a user-friendly tool.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Reposted by Robin Anger
CryoCrane, a visualization tool for cryo-EM screening data, aims to provide an intuitive way to visualize micrographs and to speed up data analysis. #CryoEM #SampleOptimization #GridScreening doi.org/10.1107/S205...
February 11, 2025 at 3:49 PM
CryoCrane, a visualization tool for cryo-EM screening data, aims to provide an intuitive way to visualize micrographs and to speed up data analysis. #CryoEM #SampleOptimization #GridScreening doi.org/10.1107/S205...
Reposted by Robin Anger
Very happy to share our last preprint where we investigated the vesicular organization of dopamine hub synapses with cryo-CLEM. It is a brain structure that emerges as an important regulator of striatal activity. Many thanks to David Perrais, Etienne Herzog and the lab of @fronzeslab.bsky.social !
Cryo-correlative light and electron tomography of dopaminergic axonal varicosities reveals non-synaptic modulation of cortico-striatal synapses https://www.biorxiv.org/content/10.1101/2025.02.07.637058v1
February 12, 2025 at 8:27 AM
Very happy to share our last preprint where we investigated the vesicular organization of dopamine hub synapses with cryo-CLEM. It is a brain structure that emerges as an important regulator of striatal activity. Many thanks to David Perrais, Etienne Herzog and the lab of @fronzeslab.bsky.social !
Reposted by Robin Anger
@stevestuwill.bsky.social you posted on 𝕏 on Dec 5, 2020 this stunning video - why not repeat on 🔵bsky ? (sorry, I did)...
"Time-lapse footage of a vampire amoeba: a microscopic organism that feeds on algal cells by breaking through their cell walls and sucking out their insides."
#ProtistsOnSky
"Time-lapse footage of a vampire amoeba: a microscopic organism that feeds on algal cells by breaking through their cell walls and sucking out their insides."
#ProtistsOnSky
February 5, 2025 at 2:56 PM
@stevestuwill.bsky.social you posted on 𝕏 on Dec 5, 2020 this stunning video - why not repeat on 🔵bsky ? (sorry, I did)...
"Time-lapse footage of a vampire amoeba: a microscopic organism that feeds on algal cells by breaking through their cell walls and sucking out their insides."
#ProtistsOnSky
"Time-lapse footage of a vampire amoeba: a microscopic organism that feeds on algal cells by breaking through their cell walls and sucking out their insides."
#ProtistsOnSky
Reposted by Robin Anger
Hey #teamtomo, if you often find yourself using the excellent membrain-seg from @lorenzlamm.bsky.social et al., you might find my napari plugin "napari-segselect" useful. Let's say your tomogram contains the edges of two bacterial cells, each with a membrane and cell wall:
February 6, 2025 at 11:02 AM
Hey #teamtomo, if you often find yourself using the excellent membrain-seg from @lorenzlamm.bsky.social et al., you might find my napari plugin "napari-segselect" useful. Let's say your tomogram contains the edges of two bacterial cells, each with a membrane and cell wall:
Reposted by Robin Anger
Answering the call of @haesleinhuepf.bsky.social, Christian Tischer, Pete Bankhead, @kbias.bsky.social @bethcimini.bsky.social
My Fiji training notes are now FAIR. All online in an open format to download and use for teaching and training. All in Google Doc or PDF formats
bit.ly/4hkfEBF
My Fiji training notes are now FAIR. All online in an open format to download and use for teaching and training. All in Google Doc or PDF formats
bit.ly/4hkfEBF
Home
This site contains the complete version of the Fiji Training Manual that is written and maintained by Cameron Nowell of the Monash Institue of Pharmaceutical Science.
This manual is provided under the...
bit.ly
February 5, 2025 at 10:57 PM
Answering the call of @haesleinhuepf.bsky.social, Christian Tischer, Pete Bankhead, @kbias.bsky.social @bethcimini.bsky.social
My Fiji training notes are now FAIR. All online in an open format to download and use for teaching and training. All in Google Doc or PDF formats
bit.ly/4hkfEBF
My Fiji training notes are now FAIR. All online in an open format to download and use for teaching and training. All in Google Doc or PDF formats
bit.ly/4hkfEBF
Reposted by Robin Anger
DeepSeek's open AI model is giving scientists worldwide the opportunity to train custom reasoning models designed to solve problems in their disciplines.
https://go.nature.com/4azXz07
https://go.nature.com/4azXz07
Scientists flock to DeepSeek: how they’re using the blockbuster AI model
Researchers are testing how well the open model can perform scientific tasks — in topics from mathematics to cognitive neuroscience.
go.nature.com
January 29, 2025 at 6:15 PM
DeepSeek's open AI model is giving scientists worldwide the opportunity to train custom reasoning models designed to solve problems in their disciplines.
https://go.nature.com/4azXz07
https://go.nature.com/4azXz07
Reposted by Robin Anger
I am starting to assemble a starter pack with past and current members of our institute @iecb.bsky.social
Send me a message if you wish to be included.
go.bsky.app/L86XUk1
Send me a message if you wish to be included.
go.bsky.app/L86XUk1
January 29, 2025 at 10:30 AM
I am starting to assemble a starter pack with past and current members of our institute @iecb.bsky.social
Send me a message if you wish to be included.
go.bsky.app/L86XUk1
Send me a message if you wish to be included.
go.bsky.app/L86XUk1
Reposted by Robin Anger
An #AI model created to design proteins simulates 500 million years of protein evolution in developing a previously unknown bright fluorescent protein.
Learn more in a new Science study: https://scim.ag/40l2z3J
Learn more in a new Science study: https://scim.ag/40l2z3J
January 17, 2025 at 3:07 PM
An #AI model created to design proteins simulates 500 million years of protein evolution in developing a previously unknown bright fluorescent protein.
Learn more in a new Science study: https://scim.ag/40l2z3J
Learn more in a new Science study: https://scim.ag/40l2z3J
