Lisa Buchauer
@libuchauer.bsky.social
Computational Biologist.
Mathematical models, omics methods and data analysis for immunology and infection research at Charité Berlin.
https://buchauer-lab.eu
Mathematical models, omics methods and data analysis for immunology and infection research at Charité Berlin.
https://buchauer-lab.eu
Pinned
Lisa Buchauer
@libuchauer.bsky.social
· Jan 7
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!
Reposted by Lisa Buchauer
I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
January 7, 2026 at 7:02 PM
I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!
📧 Full details, incl on how to apply here buchauer-lab.eu/join/
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
January 7, 2026 at 7:02 PM
📧 Full details, incl on how to apply here buchauer-lab.eu/join/
📍 Start: March/April 2026 (some flexibility) | Location: Berlin (Charité Virchow Campus and MDC-BIMSB)
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
January 7, 2026 at 7:02 PM
📍 Start: March/April 2026 (some flexibility) | Location: Berlin (Charité Virchow Campus and MDC-BIMSB)
💡 We're looking for strong quantitative background (CS, physics, math, ML, bioinformatics), solid programming skills (Python/R), and machine learning experience.
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
January 7, 2026 at 7:02 PM
💡 We're looking for strong quantitative background (CS, physics, math, ML, bioinformatics), solid programming skills (Python/R), and machine learning experience.
🧬 You'll develop an "immune ecotype" framework that uses single-cell RNAseq data to build ML classifiers for early lung disease diagnosis. Build algorithms to integrate scRNA-seq data from >1,000 patients, engineer interpretable immune features, train ML classifiers for disease prediction.
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
January 7, 2026 at 7:02 PM
🧬 You'll develop an "immune ecotype" framework that uses single-cell RNAseq data to build ML classifiers for early lung disease diagnosis. Build algorithms to integrate scRNA-seq data from >1,000 patients, engineer interpretable immune features, train ML classifiers for disease prediction.
I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!
LinkedIn
This link will take you to a page that’s not on LinkedIn
lnkd.in
January 7, 2026 at 7:02 PM
I'm excited to announce we're recruiting a PhD student in Machine Learning for Immunology within the Einstein Center for Early Disease Interception, together with Simon Haas!
Reposted by Lisa Buchauer
#ScientistSpotlight: This week we’re introducing Verena Körber, one of the newest Group Leaders at the MRC WIMM.
@rdm.ox.ac.uk @medsci.ox.ac.uk @ox.ac.uk
@rdm.ox.ac.uk @medsci.ox.ac.uk @ox.ac.uk
November 18, 2025 at 9:43 AM
#ScientistSpotlight: This week we’re introducing Verena Körber, one of the newest Group Leaders at the MRC WIMM.
@rdm.ox.ac.uk @medsci.ox.ac.uk @ox.ac.uk
@rdm.ox.ac.uk @medsci.ox.ac.uk @ox.ac.uk
(looking for teaching projects for the coming semester ;-) )
November 16, 2025 at 9:06 AM
(looking for teaching projects for the coming semester ;-) )
Hi Lorenz, sounds very interesting, is the material available or could you share the outline?
November 16, 2025 at 9:02 AM
Hi Lorenz, sounds very interesting, is the material available or could you share the outline?
Reposted by Lisa Buchauer
We care a lot about time. Now one of my best science friends, Melania Barile, et al. introduce TemporalVAE, a deep generative model that maps scRNA-seq data onto developmental time! It works with zero-shot & identifies time-sensitive genes @natcellbio.nature.com
🧪
🧪
TemporalVAE: atlas-assisted temporal mapping of time-series single-cell transcriptomes during embryogenesis
Nature Cell Biology - Liu et al. present TemporalVAE, a method for integrating single-cell time course data. The model proposes a workflow to determine the biological timing of samples and its...
doi.org
November 16, 2025 at 8:08 AM
We care a lot about time. Now one of my best science friends, Melania Barile, et al. introduce TemporalVAE, a deep generative model that maps scRNA-seq data onto developmental time! It works with zero-shot & identifies time-sensitive genes @natcellbio.nature.com
🧪
🧪
Reposted by Lisa Buchauer
Im November macht das #Utopiemobil erneut Halt im #Futurium in #Berlin. Am 13.11. geht es im Rahmen eines 🌟Open Lab Abends🌟ab 17 Uhr um die Zukunft der #Wissenschaftskommunikation. U.a. mit @leoniewenz.bsky.social und @libuchauer.bsky.social
Alle Infos:🔗 www.diejungeakademie.de/de/veranstal...
Alle Infos:🔗 www.diejungeakademie.de/de/veranstal...
October 7, 2025 at 10:00 AM
Im November macht das #Utopiemobil erneut Halt im #Futurium in #Berlin. Am 13.11. geht es im Rahmen eines 🌟Open Lab Abends🌟ab 17 Uhr um die Zukunft der #Wissenschaftskommunikation. U.a. mit @leoniewenz.bsky.social und @libuchauer.bsky.social
Alle Infos:🔗 www.diejungeakademie.de/de/veranstal...
Alle Infos:🔗 www.diejungeakademie.de/de/veranstal...
Reposted by Lisa Buchauer
🔍 Wir suchen als Verstärkung eine Leitung für unsere Geschäftsstelle in #Berlin! 📍💼
✍️ Hier bewerben:
karriere.leopoldina.org/jobposting/e...
#Job #Stellenausschreibung #Stellenangebot #Organisationsentwicklung #Personalführung #Wissenschaftskommunikation #Wissenschaftsmanagement
✍️ Hier bewerben:
karriere.leopoldina.org/jobposting/e...
#Job #Stellenausschreibung #Stellenangebot #Organisationsentwicklung #Personalführung #Wissenschaftskommunikation #Wissenschaftsmanagement
September 9, 2025 at 2:02 PM
🔍 Wir suchen als Verstärkung eine Leitung für unsere Geschäftsstelle in #Berlin! 📍💼
✍️ Hier bewerben:
karriere.leopoldina.org/jobposting/e...
#Job #Stellenausschreibung #Stellenangebot #Organisationsentwicklung #Personalführung #Wissenschaftskommunikation #Wissenschaftsmanagement
✍️ Hier bewerben:
karriere.leopoldina.org/jobposting/e...
#Job #Stellenausschreibung #Stellenangebot #Organisationsentwicklung #Personalführung #Wissenschaftskommunikation #Wissenschaftsmanagement
Habe letztens das bekommen:
July 10, 2025 at 11:55 AM
Habe letztens das bekommen:
Reposted by Lisa Buchauer
Few dates left to apply for this tenure-track professorship on Single-Cell Systems Biology in my department at @uni-wuerzburg.de. Competitive package and highly attractive research environment at the Institute of Systems Immunology.
We have an attractive opening for a tenure-track professorship in Single-Cell Systems Biology. Excellent package and infrastructure at @uni-wuerzburg.de Institute of Systems Immunology. Great place to live and work in the heart of the franconian wine region!
jobs.sciencecareers.org/job/673667/j...
jobs.sciencecareers.org/job/673667/j...
junior professorship position (f/m/d) in Single-Cell Systems Biology - Würzburg (Stadt), Bayern (DE) job with Julius-Maximilians-University Würzburg - Faculty of Medicine | 673667
The Julius-Maximilians-University Würzburg, Faculty of Medicine is offering one junior professorship position (f/m/d) in Single-Cell Systems Biology.
jobs.sciencecareers.org
July 2, 2025 at 7:00 AM
Few dates left to apply for this tenure-track professorship on Single-Cell Systems Biology in my department at @uni-wuerzburg.de. Competitive package and highly attractive research environment at the Institute of Systems Immunology.
Reposted by Lisa Buchauer
Postdoc position in our group at @ebi.embl.org about analyzing single cell data sets to better understand and treat neurodegen diseases, in collab with A Bassett, M Lotfollahi, @bayraktarlab.bsky.social, M Strauss and others within Open Targets. Deadline 20/07.
Please share
tinyurl.com/87wj466m
Please share
tinyurl.com/87wj466m
Postdoctoral Fellow in computational modelling of NeuroImmune Mechanisms of Neurodegeneration (Open Targets)
Your role As a Postdoctoral Fellow on the NeuroImmune Open Targets project, you will develop and apply integrative computational pipelines to dissect immune-cell phenotypes and cell–cell interactions ...
tinyurl.com
July 2, 2025 at 9:30 AM
Postdoc position in our group at @ebi.embl.org about analyzing single cell data sets to better understand and treat neurodegen diseases, in collab with A Bassett, M Lotfollahi, @bayraktarlab.bsky.social, M Strauss and others within Open Targets. Deadline 20/07.
Please share
tinyurl.com/87wj466m
Please share
tinyurl.com/87wj466m
Reposted by Lisa Buchauer
We have a curator position at @ebi.embl.org to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July.
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Scientific Database Curator – Fibrosis Transcriptomics
We are seeking a technically skilled and biologically literate Scientific Database Curator to join a focused initiative on fibrosis research, hosted at EMBL-EBI in collaboration with the Saez-Rodrigue...
embl.wd103.myworkdayjobs.com
July 2, 2025 at 9:29 AM
We have a curator position at @ebi.embl.org to work with GSK within a project to understand fibrotic processes (no PhD required). Deadline 20th July.
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
Please share 🙏
embl.wd103.myworkdayjobs.com/en-US/EMBL/j...
See the joint job posting for all consortium projects www.circadianmedicine.de, visit our lab website buchauer-lab.eu, and apply by August 8th.
#trr418 #circadianmedicine
#trr418 #circadianmedicine
TRR 418 - Foundations of Circadian Medicine
TRR 418 – Foundations of Circadian Medicine is looking for PhD students and postdoctoral researchers who are eager to push boundaries and help pioneer a new era of circadian clock-based diagnostics an...
www.circadianmedicine.de
July 2, 2025 at 8:51 AM
See the joint job posting for all consortium projects www.circadianmedicine.de, visit our lab website buchauer-lab.eu, and apply by August 8th.
#trr418 #circadianmedicine
#trr418 #circadianmedicine
We offer the opportunity to work part-time (0.75FTE or more). Please reach out to me with any questions. Prior experience with the Berlin computational ecosystem is considered a plus!
July 2, 2025 at 8:51 AM
We offer the opportunity to work part-time (0.75FTE or more). Please reach out to me with any questions. Prior experience with the Berlin computational ecosystem is considered a plus!
We are looking for independent, detail-oriented individuals that want to make a difference for the entire consortium by constructing high-quality data assets and innovative computational omics methods with a circadian twist.
July 2, 2025 at 8:51 AM
We are looking for independent, detail-oriented individuals that want to make a difference for the entire consortium by constructing high-quality data assets and innovative computational omics methods with a circadian twist.
We are currently recruiting a bioinformatics/computational biology postdoc to join the infrastructure project of a newly funded large research consortium (SFB-TRR) on Circadian Medicine between Charité - Universitätsmedizin Berlin and Universität zu Lübeck ⌚ ⏰ ⏱️ 🕰️ !
July 2, 2025 at 8:51 AM
We are currently recruiting a bioinformatics/computational biology postdoc to join the infrastructure project of a newly funded large research consortium (SFB-TRR) on Circadian Medicine between Charité - Universitätsmedizin Berlin and Universität zu Lübeck ⌚ ⏰ ⏱️ 🕰️ !
Reposted by Lisa Buchauer
US terminates its support for @gavi.org the vaccine alliance that supplies life-saving vaccines the world’s poorest. Vaccines are among the safest, most effective prevention measures ever introduced. This is a disastrous and short-sighted decision!
US to stop financial support of global vaccine alliance Gavi, health secretary says
Health Secretary Robert F. Kennedy Jr said on Wednesday that the U.S. government will no longer contribute to Gavi, accusing the group that helps buy vaccines for the world's poorest children of ignoring safety, without providing evidence.
www.reuters.com
June 25, 2025 at 10:07 PM
US terminates its support for @gavi.org the vaccine alliance that supplies life-saving vaccines the world’s poorest. Vaccines are among the safest, most effective prevention measures ever introduced. This is a disastrous and short-sighted decision!
the R is probably the biggest problem 😀 and then the hexagon, I think that is R visual language as well
June 12, 2025 at 1:59 PM
the R is probably the biggest problem 😀 and then the hexagon, I think that is R visual language as well
decoupler has been very useful for us & helps you dive into meaningful sc analysis quickly!
small suggestion to increase uptake: consider changing the logo, at least two python users here initially immediately closed the tab as they thought is was an R package🙃
small suggestion to increase uptake: consider changing the logo, at least two python users here initially immediately closed the tab as they thought is was an R package🙃
🔧 decoupler 2.0.6 is out thanks to @paubadiam.bsky.social, now as a core @scverse.bsky.social package scverse.org
This release includes a streamlined API aligned with scverse standards, updated vignettes, and a new one on pseudotime enrichment analysis 👇
decoupler.readthedocs.io/en/latest/
This release includes a streamlined API aligned with scverse standards, updated vignettes, and a new one on pseudotime enrichment analysis 👇
decoupler.readthedocs.io/en/latest/
June 12, 2025 at 7:48 AM
decoupler has been very useful for us & helps you dive into meaningful sc analysis quickly!
small suggestion to increase uptake: consider changing the logo, at least two python users here initially immediately closed the tab as they thought is was an R package🙃
small suggestion to increase uptake: consider changing the logo, at least two python users here initially immediately closed the tab as they thought is was an R package🙃
Reposted by Lisa Buchauer
💡 Great science needs great environments. We are proud that our Single Cell Focus Area is among the ten “Best Research Environments 2024” – selected by @jungeakademie.bsky.social together with the @volkswagenstiftung.de. Congratulations! 🥳
More details:
👉 www.diejungeakademie.de/en/press/bes... 👈
More details:
👉 www.diejungeakademie.de/en/press/bes... 👈
June 12, 2025 at 7:01 AM
💡 Great science needs great environments. We are proud that our Single Cell Focus Area is among the ten “Best Research Environments 2024” – selected by @jungeakademie.bsky.social together with the @volkswagenstiftung.de. Congratulations! 🥳
More details:
👉 www.diejungeakademie.de/en/press/bes... 👈
More details:
👉 www.diejungeakademie.de/en/press/bes... 👈