@guilhemroyer.bsky.social
Reposted
Evidence for Neolithic acquisition of the high pathogenic island by Escherichia coli followed by recent selection https://www.biorxiv.org/content/10.1101/2025.09.17.676721v1
September 19, 2025 at 4:32 AM
Evidence for Neolithic acquisition of the high pathogenic island by Escherichia coli followed by recent selection https://www.biorxiv.org/content/10.1101/2025.09.17.676721v1
Metabolic signatures of extraintestinal pathogenic E. coli
Using a pangenome-based approach and metabolic pathway predictions, we investigated metabolic features associated with both lifestyle and phylogenetic background
www.biorxiv.org/content/10.1...
@vallenet.bsky.social @iame-umr1137.bsky.social
Using a pangenome-based approach and metabolic pathway predictions, we investigated metabolic features associated with both lifestyle and phylogenetic background
www.biorxiv.org/content/10.1...
@vallenet.bsky.social @iame-umr1137.bsky.social
Identification of specific metabolic capacities associated with major extraintestinal pathogenic Escherichia coli lineages
Bacterial niche colonization relies on multiple factors, among which the metabolic capacity to utilize specific substrates is pivotal, especially within complex microbiota where nutrient competition i...
www.biorxiv.org
September 15, 2025 at 1:22 PM
Metabolic signatures of extraintestinal pathogenic E. coli
Using a pangenome-based approach and metabolic pathway predictions, we investigated metabolic features associated with both lifestyle and phylogenetic background
www.biorxiv.org/content/10.1...
@vallenet.bsky.social @iame-umr1137.bsky.social
Using a pangenome-based approach and metabolic pathway predictions, we investigated metabolic features associated with both lifestyle and phylogenetic background
www.biorxiv.org/content/10.1...
@vallenet.bsky.social @iame-umr1137.bsky.social
Reposted
1/9 🚨 New preprint alert!
Frustrated by strange results with your metagenomic data?
Meet CroCoDeEL, an accurate, easy-to-use tool to detect and quantify cross-sample contamination—no need for negative controls or sample positions!
🔗 doi.org/10.1101/2025...
Frustrated by strange results with your metagenomic data?
Meet CroCoDeEL, an accurate, easy-to-use tool to detect and quantify cross-sample contamination—no need for negative controls or sample positions!
🔗 doi.org/10.1101/2025...
CroCoDeEL: accurate control-free detection of cross-sample contamination in metagenomic data
Metagenomic sequencing provides profound insights into microbial communities, but it is often compromised by technical biases, including cross-sample contamination. This underexplored phenomenon arise...
doi.org
January 20, 2025 at 12:42 PM
1/9 🚨 New preprint alert!
Frustrated by strange results with your metagenomic data?
Meet CroCoDeEL, an accurate, easy-to-use tool to detect and quantify cross-sample contamination—no need for negative controls or sample positions!
🔗 doi.org/10.1101/2025...
Frustrated by strange results with your metagenomic data?
Meet CroCoDeEL, an accurate, easy-to-use tool to detect and quantify cross-sample contamination—no need for negative controls or sample positions!
🔗 doi.org/10.1101/2025...