Camille Marchet ⚡
@camillemrcht.bsky.social
Researcher in @BonsaiSeqBioinfo
Lille, France. Bioinformatics, data-structures for DNA/RNA.
Lille, France. Bioinformatics, data-structures for DNA/RNA.
Pinned
‘Google for DNA’ brings order to biology’s big data
MetaGraph compresses vast data archives into a search engine for scientists, opening up new frontiers of biological discovery.
www.nature.com
Ca n'est pas si souvent, un article publié dans Nature met ma communauté à l'honneur (la bioinformatique des séquences). Je vous raconte ?
www.nature.com/articles/d41...
www.nature.com/articles/d41...
Reposted by Camille Marchet ⚡
Our latest preprint on how to best combine multiple samples in lrRNA-seq experiment. Not, trivial as your capacity for detecting known and novel transcripts is affected. We discovered that results depend on data and reconstruction algorithm. @nanoporetech.com @pacbio.bsky.social
tinyurl.com/4pnnbd92
tinyurl.com/4pnnbd92
To join or not to join: handling biological replicates in long-read RNA sequencing data
Long-read RNA sequencing (lrRNA-seq) has revolutionized transcriptomics facilitating the study of alternative splicing and resulting in identification of thousands of novel transcripts. While isoform ...
www.biorxiv.org
December 13, 2025 at 11:12 AM
Our latest preprint on how to best combine multiple samples in lrRNA-seq experiment. Not, trivial as your capacity for detecting known and novel transcripts is affected. We discovered that results depend on data and reconstruction algorithm. @nanoporetech.com @pacbio.bsky.social
tinyurl.com/4pnnbd92
tinyurl.com/4pnnbd92
Reposted by Camille Marchet ⚡
It's not just social media. Looks like visitors to the US from Europe and other countries that are part of the visa waiver program will have to submit an enormous amount of data about themselves and their families, including DNA, if proposed new rules are accepted
December 12, 2025 at 12:24 PM
It's not just social media. Looks like visitors to the US from Europe and other countries that are part of the visa waiver program will have to submit an enormous amount of data about themselves and their families, including DNA, if proposed new rules are accepted
Reposted by Camille Marchet ⚡
Nicolas Sarkozy reçoit le “prix de littérature” de la FIFA https://www.legorafi.fr/2025/12/12/nicolas-sarkozy-recoit-le-prix-de-litterature-de-la-fifa/
Nicolas Sarkozy reçoit le “prix de littérature” de la FIFA
Toute l'information selon des sources contradictoires.
www.legorafi.fr
December 12, 2025 at 4:08 PM
Nicolas Sarkozy reçoit le “prix de littérature” de la FIFA https://www.legorafi.fr/2025/12/12/nicolas-sarkozy-recoit-le-prix-de-litterature-de-la-fifa/
Reposted by Camille Marchet ⚡
Leaders at @ukri.org should be seriously looking at the lottery first idea. 68% lower economic costs, increase in diversity of award holders and well received.
www.nature.com/articles/s41...
www.nature.com/articles/s41...
Lottery before peer review is associated with increased female representation and reduced estimated economic cost in a German funding line - Nature Communications
The authors show evidence from a German funding line that a lottery-first approach followed by peer review is accompanied by increased female representation both at the submission stage and among fund...
www.nature.com
December 11, 2025 at 6:39 PM
Minimizer doing k-mers
December 10, 2025 at 11:06 AM
Minimizer doing k-mers
Woah then I'm pretty sure I'll never enter the country under the current regime 🙄 (I already had decided not to go, but even if I wanted to...)
December 10, 2025 at 10:49 AM
Woah then I'm pretty sure I'll never enter the country under the current regime 🙄 (I already had decided not to go, but even if I wanted to...)
Reposted by Camille Marchet ⚡
Une étude affirmant que le glyphosate ne présente aucun risque grave pour la santé retirée pour suspicion de conflits d'intérêts, 25 ans après sa publication www.franceinfo.fr/environnemen...
Une étude affirmant que le glyphosate ne présente aucun risque grave pour la santé retirée pour suspicion de conflits d'intérêts
Dans sa note de rétractation, le journal cite toute une série de lacunes "critiques" : omission d'inclure certaines études sur les dangers liés au cancer, non-divulgation de la participation de salari...
https://www.franceinfo.fr/environnement/transition-ecologique-de-l-agriculture/pesticides/glyphosate/une-etude-affirmant-que-le-glyphosate-ne-presente-aucun-risque-grave-pour-la-sante-retiree-pour-suspicion-de-conflits-d-interets_7663813.html#xtor=CS2-765-[autres]-
December 7, 2025 at 9:38 AM
Une étude affirmant que le glyphosate ne présente aucun risque grave pour la santé retirée pour suspicion de conflits d'intérêts, 25 ans après sa publication www.franceinfo.fr/environnemen...
Reposted by Camille Marchet ⚡
This entire grift relies on convincing people that they don't know how to do the things they have always known how to do, and ironically, if it works, we will, in a very short amount of time, forget how to do all the things we have always known how to do.
Jimmy Fallon: "And do you use ChatGPT when raising your baby?"
Sam Altman: "I cannot imagine figuring out how to raise a newborn without ChatGPT."
Sam Altman: "I cannot imagine figuring out how to raise a newborn without ChatGPT."
December 9, 2025 at 3:40 PM
This entire grift relies on convincing people that they don't know how to do the things they have always known how to do, and ironically, if it works, we will, in a very short amount of time, forget how to do all the things we have always known how to do.
Oh mais j'avais pas vu vous avez toustes la classe @thomas-morel.bsky.social
I won a prize 🥰 Le prix en histoire des sciences – Subvention Émile Blutet– Fondation Paul Louis Doistau 2025 de
@academiesciences.bsky.social @uni-wuppertal.bsky.social
@academiesciences.bsky.social @uni-wuppertal.bsky.social
December 9, 2025 at 4:28 PM
Oh mais j'avais pas vu vous avez toustes la classe @thomas-morel.bsky.social
Reposted by Camille Marchet ⚡
🎖️ Félicitations à Clémentine Maurice (@bloody-tangerine.bsky.social), Chargée de Recherche @cnrs-hautsdefrance.bsky.social, qui a reçu le Prix Inria @academiesciences.bsky.social des Jeunes Chercheuses et Jeunes Chercheurs 👇
www.hauts-de-france.cnrs.fr/fr/cnrsinfo/...
www.hauts-de-france.cnrs.fr/fr/cnrsinfo/...
December 5, 2025 at 8:53 AM
🎖️ Félicitations à Clémentine Maurice (@bloody-tangerine.bsky.social), Chargée de Recherche @cnrs-hautsdefrance.bsky.social, qui a reçu le Prix Inria @academiesciences.bsky.social des Jeunes Chercheuses et Jeunes Chercheurs 👇
www.hauts-de-france.cnrs.fr/fr/cnrsinfo/...
www.hauts-de-france.cnrs.fr/fr/cnrsinfo/...
Reposted by Camille Marchet ⚡
"La guerre contre l'Europe a déjà commencé. Simplement, nous ne l’appelons pas encore ainsi. Notre véritable adversaire est bien l’Europe, et non la malheureuse Ukraine"
Sergei Karaganov, un des principaux idéologues du Kremlin, vendredi dernier.
Au moins, c'est explicite.
t.me/skabeeva/39268
Sergei Karaganov, un des principaux idéologues du Kremlin, vendredi dernier.
Au moins, c'est explicite.
t.me/skabeeva/39268
Скабеева
ПАНК-РОК. Караганов в эфире #60минут
Лучшие на снаряде. Новая постоянная рубрика- прогноз: ‘что будет дальше’. Смотрите!
t.me
December 9, 2025 at 12:27 PM
"La guerre contre l'Europe a déjà commencé. Simplement, nous ne l’appelons pas encore ainsi. Notre véritable adversaire est bien l’Europe, et non la malheureuse Ukraine"
Sergei Karaganov, un des principaux idéologues du Kremlin, vendredi dernier.
Au moins, c'est explicite.
t.me/skabeeva/39268
Sergei Karaganov, un des principaux idéologues du Kremlin, vendredi dernier.
Au moins, c'est explicite.
t.me/skabeeva/39268
Reposted by Camille Marchet ⚡
Le site des concours CNRS n'est pas ouvert ?!
December 9, 2025 at 8:41 AM
Le site des concours CNRS n'est pas ouvert ?!
Reposted by Camille Marchet ⚡
Le saviez-vous ? Vous pouvez vous abonner d’un seul coup à non pas un, non pas deux, mais HUIT médias indépendants grâce à @lapresselibre.bsky.social, et ainsi permettre à autant de rédaction de travailler plus sereinement — à un moment où on a grand besoin de journalistes qui font du bon boulot.
December 7, 2025 at 4:49 PM
Le saviez-vous ? Vous pouvez vous abonner d’un seul coup à non pas un, non pas deux, mais HUIT médias indépendants grâce à @lapresselibre.bsky.social, et ainsi permettre à autant de rédaction de travailler plus sereinement — à un moment où on a grand besoin de journalistes qui font du bon boulot.
Pas mal la fête des lumières cette année
December 7, 2025 at 1:01 PM
Pas mal la fête des lumières cette année
Bedtools in rust has to be bedder
We are thrilled to announce the first official release (v0.1.8) of #𝗯𝗲𝗱𝗱𝗲𝗿, the successor to one of our flagship tool, #𝗯𝗲𝗱𝘁𝗼𝗼𝗹𝘀! Based on ideas we conceived of long ago (!), this was achieved thanks to the dedication of Brent Pedersen.
1/n
1/n
Intro to Bedder – The Quinlan Lab
quinlanlab.org
December 5, 2025 at 6:55 PM
Bedtools in rust has to be bedder
Reposted by Camille Marchet ⚡
We are thrilled to announce the first official release (v0.1.8) of #𝗯𝗲𝗱𝗱𝗲𝗿, the successor to one of our flagship tool, #𝗯𝗲𝗱𝘁𝗼𝗼𝗹𝘀! Based on ideas we conceived of long ago (!), this was achieved thanks to the dedication of Brent Pedersen.
1/n
1/n
Intro to Bedder – The Quinlan Lab
quinlanlab.org
December 2, 2025 at 2:28 AM
Reposted by Camille Marchet ⚡
Ok, this is a first. I have a fastq file with an accession that I *can not find anywhere*. That is, the file has an SRR#, that is embedded in the read headers (and matches the file name), but I can't find this file anywhere (ENA/SRA/etc.). Has anyone ever encountered this?
December 5, 2025 at 5:31 AM
Ok, this is a first. I have a fastq file with an accession that I *can not find anywhere*. That is, the file has an SRR#, that is embedded in the read headers (and matches the file name), but I can't find this file anywhere (ENA/SRA/etc.). Has anyone ever encountered this?
Qui a eu le prix de quoi par qui ? Dites STOPGORAFI par sms.
🇺🇸 Le président américain Donald Trump a été nommé vendredi premier lauréat du nouveau Prix de la paix de la Fifa, pendant la cérémonie de tirage au sort du Mondial-2026 à Washington.
December 5, 2025 at 6:43 PM
Qui a eu le prix de quoi par qui ? Dites STOPGORAFI par sms.
Reposted by Camille Marchet ⚡
Happy to share our new AMR resource which has phenotypic AMR (usually MIC data) collected from publications and databases. This is paired with assemblies and annotations
We're excited for users who might train new models, find phenotype/genotype mismatches, or any other use
We're excited for users who might train new models, find phenotype/genotype mismatches, or any other use
Antimicrobial resistance (AMR) is a growing health threat, making infections harder to treat and complicating routine medical care.
EMBL-EBI’s new AMR portal brings together laboratory resistance data and bacterial genomes in one open platform.
#WAAW2025 #ActOnAMR
www.ebi.ac.uk/about/news/t...
🧬💻
EMBL-EBI’s new AMR portal brings together laboratory resistance data and bacterial genomes in one open platform.
#WAAW2025 #ActOnAMR
www.ebi.ac.uk/about/news/t...
🧬💻
A new gateway to global antimicrobial resistance data
New online portal connects bacterial genomes with experimental resistance data to support antimicrobial resistance research.
www.ebi.ac.uk
November 19, 2025 at 12:27 PM
Happy to share our new AMR resource which has phenotypic AMR (usually MIC data) collected from publications and databases. This is paired with assemblies and annotations
We're excited for users who might train new models, find phenotype/genotype mismatches, or any other use
We're excited for users who might train new models, find phenotype/genotype mismatches, or any other use
Reposted by Camille Marchet ⚡
Autopromo: www.madore.org/~david/weblo...
Merci de ne pas faire dire n'importe quoi à Gödel !
www.madore.org
December 5, 2025 at 3:18 PM
Autopromo: www.madore.org/~david/weblo...
Reposted by Camille Marchet ⚡
Mais dit moi #ESR y'a vraiment des gens qui achètent un poster de leur article 89 p*tain de dollars ou des reprints dudit papier 279 p*tain de dollars à Springer Nature ?
Qui sont ils ?
Quels sont leurs réseaux ?
Est-ce qu'ils peuvent me filer une partie de leur pognon ?
Qui sont ils ?
Quels sont leurs réseaux ?
Est-ce qu'ils peuvent me filer une partie de leur pognon ?
December 5, 2025 at 6:55 AM
Mais dit moi #ESR y'a vraiment des gens qui achètent un poster de leur article 89 p*tain de dollars ou des reprints dudit papier 279 p*tain de dollars à Springer Nature ?
Qui sont ils ?
Quels sont leurs réseaux ?
Est-ce qu'ils peuvent me filer une partie de leur pognon ?
Qui sont ils ?
Quels sont leurs réseaux ?
Est-ce qu'ils peuvent me filer une partie de leur pognon ?
Reposted by Camille Marchet ⚡
NEW: Elon Musk's Grok chatbot will, with minimal prompting, provide residential addresses of everyday Americans.
Prompts as simple as "[name] address" immediately returned accurate home addresses of private citizens — alongside other personal info we didn't ask for.
futurism.com/future-socie...
Prompts as simple as "[name] address" immediately returned accurate home addresses of private citizens — alongside other personal info we didn't ask for.
futurism.com/future-socie...
December 4, 2025 at 2:31 PM
NEW: Elon Musk's Grok chatbot will, with minimal prompting, provide residential addresses of everyday Americans.
Prompts as simple as "[name] address" immediately returned accurate home addresses of private citizens — alongside other personal info we didn't ask for.
futurism.com/future-socie...
Prompts as simple as "[name] address" immediately returned accurate home addresses of private citizens — alongside other personal info we didn't ask for.
futurism.com/future-socie...
J'ai quand même une question assez profonde, dans une ville comme Lille qui a même un quartier qui s'appelle les Moulins, pourquoi c'est mission impossible de trouver du bon pain ?
December 4, 2025 at 4:40 PM
J'ai quand même une question assez profonde, dans une ville comme Lille qui a même un quartier qui s'appelle les Moulins, pourquoi c'est mission impossible de trouver du bon pain ?
Vivement que Mistral extraie automatiquement mon CRAC pour qu'on puisse me demander autre chose à la place 👌🏻
Le #CNRS va proposer son chatbot IA Emmy à ses agents et proscrire les autres
next.ink/brief_articl...
next.ink/brief_articl...
Le CNRS va proposer son chatbot IA Emmy à ses agents et proscrire les autres - Next
next.ink
December 4, 2025 at 12:19 PM
Vivement que Mistral extraie automatiquement mon CRAC pour qu'on puisse me demander autre chose à la place 👌🏻
Reposted by Camille Marchet ⚡
Are you interested in biodiversity genomics? Fantastic opportunity to join us as a Group Leader at the Tree of Life Programme, @sangerinstitute.bsky.social.
👇
sanger.wd103.myworkdayjobs.com/en-GB/Wellco...
👇
sanger.wd103.myworkdayjobs.com/en-GB/Wellco...
Group Leader - Biodiversity Genomics
Do you want to help us improve human health and understand life on Earth? Make your mark by shaping the future to enable or deliver life-changing science to solve some of humanity’s greatest challenge...
sanger.wd103.myworkdayjobs.com
December 4, 2025 at 12:09 PM
Are you interested in biodiversity genomics? Fantastic opportunity to join us as a Group Leader at the Tree of Life Programme, @sangerinstitute.bsky.social.
👇
sanger.wd103.myworkdayjobs.com/en-GB/Wellco...
👇
sanger.wd103.myworkdayjobs.com/en-GB/Wellco...