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Reposted by Joseph Schacherer

Daniel Croll @danielcroll.bsky.social · 14h

Very excited to see the final version of our kingdom-scale fungal genome defense manuscript out in @plosbiology.org !

This work has been a major project of @tbadet.bsky.social during his time in our lab.

We hope to stimulate much more exciting work on fungal TEs.

journals.plos.org/plosbiology/...

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Reposted by Joseph Schacherer

Maitreya Dunham @maitreya.bsky.social · 1d

Incredible new paper from @schacherer.bsky.social et al rdcu.be/eLcTH

From genotype to phenotype with 1,086 near telomere-to-telomere yeast genomes

Nature - A newly compiled atlas of species-wide structural variants and gene-based and graph pangenomes derived from highly complete assemblies of genomes from 1,086 natural isolates enable...

rdcu.be

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Joseph Schacherer @schacherer.bsky.social · 15h

✨ Latest exciting story of the group in @nature.com. Here, we go beyond SNPs and built a species-wide atlas of genetic variants in yeast. With >1,000 near T2T genomes, we show how large genomic variations affect trait diversity.
www.nature.com/articles/s41...

From genotype to phenotype with 1,086 near telomere-to-telomere yeast genomes - Nature

A newly compiled atlas of species-wide structural variants and gene-based and graph pangenomes derived from highly complete assemblies of genomes from 1,086 natural isolates enable integrative genome-...

www.nature.com

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Reposted by Joseph Schacherer

Genetics Society of America @genetics-gsa.bsky.social · 3d

The #Yeast26 website is live—start planning your conference attendance now! 🧬

Browse abstract submission topics, key dates, speaker & venue info, details on travel funding, and more: buff.ly/HFIt31b

Bookmark the page to stay updated as new information becomes available!

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Reposted by Joseph Schacherer

Pedro Beltrao @pedrobeltrao.bsky.social · 7d

new preprint: Ubiquitin is a protein modification linked with degradation but known to regulate other functions. Over 100k ubiquitination sites have been discovered and here we (@julianvangerwen.bsky.social + others) try to prioritize those most critical to the cell www.biorxiv.org/content/10.1...

The functional landscape of the human ubiquitinome

Protein ubiquitination regulates cell biology through diverse avenues, from quality control-linked protein degradation to signaling functions such as modulating protein-protein interactions and enzyme...

www.biorxiv.org

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Joseph Schacherer @schacherer.bsky.social · 6d

Looking for science and fun by the ocean next June?🧬🌊
Join at the GSA Yeast 2026 meeting in beautiful Asilomar, Pacific Grove, CA!
📅 Save the date: June 14–18, 2026
➡️ genetics-gsa.org/yeast-2026/

Homepage - Yeast Genetics Meeting 2026

Visit our website to learn more.

genetics-gsa.org

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Joseph Schacherer @schacherer.bsky.social · Sep 1

Thrilled to share our latest work focusing on graph-based pangenome analysis highlighting structural and functional consequences of allopolyploidization

www.biorxiv.org/content/10.1...

Graph-based pangenome analysis uncovers structural and functional impacts of allopolyploidization events

The emergence of graph pangenomes has significantly advanced the study of structural variants (SVs) across diverse species. However, the impact of complex polyploidization events, particularly allopol...

www.biorxiv.org

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Reposted by Joseph Schacherer

Joseph Schacherer @schacherer.bsky.social · Aug 26

📢 Nominate your colleagues for a special lecture to be presented at the Yeast Genetics Meeting, June 13-17, 2026! It will take you 5 minutes and no need to be GSA member!

www.surveymonkey.com/r/Yeast26?ut...

2026 Yeast Genetics Meeting Nominations

Take this survey powered by surveymonkey.com. Create your own surveys for free.

www.surveymonkey.com

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Joseph Schacherer @schacherer.bsky.social · Aug 26

📢 Nominate your colleagues for a special lecture to be presented at the Yeast Genetics Meeting, June 13-17, 2026! It will take you 5 minutes and no need to be GSA member!

www.surveymonkey.com/r/Yeast26?ut...

2026 Yeast Genetics Meeting Nominations

Take this survey powered by surveymonkey.com. Create your own surveys for free.

www.surveymonkey.com

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Reposted by Joseph Schacherer

PlantEvolution 🌱🌾 @plantevolution.bsky.social · Aug 20

Out after peer review, collaborative study from Nordborg & Weigel labs with help from many others. Not the largest collection of new Arabidopsis thaliana genomes, but we hopefully put forward some good ideas for how to think about pangenomes and their analysis!
www.nature.com/articles/s41...

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Joseph Schacherer @schacherer.bsky.social · Jul 27

The Yeast2025 meeting in Paris is over, and was so much fun. It was exciting to see a room full of yeast biologists, with more than 500 people. It was also great to be part of the dream team of organizers, led by @gillesfischer.bsky.social

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Joseph Schacherer @schacherer.bsky.social · Jul 18

Nice to have a recap of our past ‪@erc.europa.eu‬ PhenomeNal project. Well, let's move on to the next one - UnMiss.

cordis.europa.eu/article/id/4...

Trait inheritance study challenges the simplicity of genes acting alone

New research shows that traits in organisms are not always inherited in straightforward ways. A gene’s effect is not isolated – it...

cordis.europa.eu

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Reposted by Joseph Schacherer

Pedro Beltrao @pedrobeltrao.bsky.social · Jul 5

Great work from Horia Todor in Carol Gross's lab showing it's possible to predict complexes in "competition" pools in AF3 resulting in the first all-by-all prediction for a species. After length correcting the ipTM score predicts well known interactions and correlating ipTM vectors also has value.

bioRxiv SysBio @biorxiv-sysbio.bsky.social · Jul 5

Predicting the protein interaction landscape of a free-living bacterium with pooled-AlphaFold3 https://www.biorxiv.org/content/10.1101/2025.07.01.662654v1

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Joseph Schacherer @schacherer.bsky.social · Jul 4

bsky.app/profile/curi...

Curieux Live @curieuxlive.bsky.social · Jun 25

Du vin avec un goût de sueur ?
Explications avec Jérémy !

Vidéo en collaboration commerciale avec l’ @univbordeaux.bsky.social

CC ‪@isvv-bordeaux.bsky.social‬ , INRAE Nouvelle Aquitaine , Bordeaux science Agro, Bordeaux INP,
@agencerecherche.bsky.social

Reposted by Joseph Schacherer

Pfliegler Lab at University of Debrecen @pflieglerlab.bsky.social · Jul 3

Wow 1000+ Brettanomyces genomes, not just from Belgium and not just from lambic! Awesome, can't wait to check the details on these #yeast s. With recent advancements from two different groups on Lachancea, more and more domesticated yeast have their population structures uncovered, not just Saccharo

Joseph Schacherer @schacherer.bsky.social · Jul 3

The latest story from the @haploteam highlights the phenotypic impact of acquired subgenomes in allopolyploids, through the lens of 1,060 Brettanomyces bruxellensis genomes. Nice collaboration with @univbordeaux.bsky.social

@unistra.fr @cnrsbiologie.bsky.social

www.nature.com/articles/s41...

Whole-genome sequencing of 1,060 Brettanomyces bruxellensis isolates reveals significant phenotypic impact of acquired subgenomes in allopolyploids - Nature Communications

The authors sequence and phenotype over 1,000 isolates of the yeast Brettanomyces bruxellensis, and show how allopolyploidization reshapes genome evolution and enhances phenotypic diversity, highlight...

www.nature.com

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Joseph Schacherer @schacherer.bsky.social · Jul 3

The latest story from the @haploteam highlights the phenotypic impact of acquired subgenomes in allopolyploids, through the lens of 1,060 Brettanomyces bruxellensis genomes. Nice collaboration with @univbordeaux.bsky.social

@unistra.fr @cnrsbiologie.bsky.social

www.nature.com/articles/s41...

Whole-genome sequencing of 1,060 Brettanomyces bruxellensis isolates reveals significant phenotypic impact of acquired subgenomes in allopolyploids - Nature Communications

The authors sequence and phenotype over 1,000 isolates of the yeast Brettanomyces bruxellensis, and show how allopolyploidization reshapes genome evolution and enhances phenotypic diversity, highlight...

www.nature.com

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Joseph Schacherer @schacherer.bsky.social · Jun 17

Beyond happy to be an ERC AdG laureate! This milestone would not have been possible without the incredible work done in the past and the dedication of all current and former members of the haploteam - www.haploteam.org

@unistra.fr‬ @cnrsbiologie.bsky.social‬ #IUF

bsky.app/profile/erc....

European Research Council (ERC) @erc.europa.eu · Jun 17

📣 Good news: 281 top researchers have just won ERC Advanced Grants!

The new funding, worth nearly €721 million, is part of the 🇪🇺 EU’s #HorizonEurope programme.

Find out more 👉 europa.eu/!JYKxkD

#ERCAdG #FrontierResearch @ec.europa.eu

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Reposted by Joseph Schacherer

Pedro Beltrao @pedrobeltrao.bsky.social · May 2

Our work on deriving protein-protein (functional) associations across different human tissues from proteomics data is now published. There is quite a lot in this paper, so I will just touch on a few highlights:
www.nature.com/articles/s41...

A tissue-specific atlas of protein–protein associations enables prioritization of candidate disease genes - Nature Biotechnology

Protein–protein interactions specific to 11 individual tissues are presented in a comprehensive resource.

www.nature.com

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Reposted by Joseph Schacherer

Joseph Schacherer @schacherer.bsky.social · Apr 16

PhD position available within the @haploteam. Application deadline - 05/31/2025. for more information, see www.haploteam.org or DM me! PhD position available in the @haploteam. Application deadline - 05/31/2025. And for more information, see www.haploteam.org or send me a message!

www.haploteam.org

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Joseph Schacherer @schacherer.bsky.social · Apr 16

PhD position available within the @haploteam. Application deadline - 05/31/2025. for more information, see www.haploteam.org or DM me! PhD position available in the @haploteam. Application deadline - 05/31/2025. And for more information, see www.haploteam.org or send me a message!

www.haploteam.org

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Reposted by Joseph Schacherer

EMBL Events @events.embl.org · Apr 8

Welcome to Day 1️⃣ of the 'Wild frontiers of model organisms'! #EESWildModels 🐠🔬
🔹Opening remarks by Flora Vincent 🙌🏼
🔹The first talk of the day: 'Unlocking nature’s arsenal: investigating phage-bacteria dynamics in aquatic ecosystems for sustainable aquaculture' presented by Frédérique Le Roux

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Joseph Schacherer @schacherer.bsky.social · Apr 7

Since 2012, we've been running the Strasbourg Ekiden with
the HaploTeam - www.haploteam.org. This is our 13th edition. And it's still just as fun!

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Joseph Schacherer @schacherer.bsky.social · Mar 31

Yeast2025 meeting, Paris, July 21-24 2025
📢 With nearly 400 abstracts submitted, the conference promises to be exciting!
🔗Registration is still possible, but but there's not much room left so hurry up if you'd like to join - premc.org/yeast2025/

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Reposted by Joseph Schacherer

Gilles FISCHER @gillesfischer.bsky.social · Mar 31

32nd International Conference on
Yeast Genetics and Molecular Biology - Paris - July 21-24, 2025
📢 With nearly 400 abstracts submitted, the #Yeast2025 conference promises to be rich and exciting! Can't wait to see the latest in yeast research
premc.org/yeast2025/

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Reposted by Joseph Schacherer

Gilles FISCHER @gillesfischer.bsky.social · Mar 24

International Conference on Yeast Genetics & Molecular Biology - #Yeast2025 🥖🍺 🍷🍶 🌳🦟

🧬 Last week to submit your abstract:
premc.org/yeast2025/su...

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