- Founding partner of the wwPDB.
- Manage the community-led PDBe-KB resource and the AlphaFold Protein Structure Database, a collaboration with Google DeepMind.
- Part of EMBL-EBI
After that, all new entries will receive extended IDs: 12 characters total, formatted as pdb_ + 8 alphanumeric characters (pdb_1000axyz)
Test it from PDB Beta Archive
Read more: www.wwpdb.org/news/news?ye...
After that, all new entries will receive extended IDs: 12 characters total, formatted as pdb_ + 8 alphanumeric characters (pdb_1000axyz)
Test it from PDB Beta Archive
Read more: www.wwpdb.org/news/news?ye...
Take 5-minutes to share your experience with AlphaFold DB search and have a say in upcoming improvements.
Fill in the survey forms.gle/K7RotPrD9ZPZ...
#AlphaFold #Bioinformatics #StructuralBiology
Take 5-minutes to share your experience with AlphaFold DB search and have a say in upcoming improvements.
Fill in the survey forms.gle/K7RotPrD9ZPZ...
#AlphaFold #Bioinformatics #StructuralBiology
Full-time, hybrid role.
Apply now! embl.wd103.myworkdayjobs.com/en-US/EMBL/d...
#AFDB #Jobs #emblebi
Full-time, hybrid role.
Apply now! embl.wd103.myworkdayjobs.com/en-US/EMBL/d...
#AFDB #Jobs #emblebi
www.wwpdb.org/news/news?ye...
#3DEM #EMDB
www.wwpdb.org/news/news?ye...
#3DEM #EMDB
🎥 Watch the talk:
ukri.zoom.us/rec/play/U_J...
#PDBeKB #CCP4 #StructuralBiology
🎥 Watch the talk:
ukri.zoom.us/rec/play/U_J...
#PDBeKB #CCP4 #StructuralBiology
📍 Calgary, Alberta (Canada)
📅 August 11–18, 2026
👉 Register now and sign up for a free half-day, hands-on wwPDB workshop:
event.fourwaves.com/iucr-2026/re...
Know more: www.wwpdb.org/news/news?ye...
#IUCr2026 #Crystallography #wwPDB
📍 Calgary, Alberta (Canada)
📅 August 11–18, 2026
👉 Register now and sign up for a free half-day, hands-on wwPDB workshop:
event.fourwaves.com/iucr-2026/re...
Know more: www.wwpdb.org/news/news?ye...
#IUCr2026 #Crystallography #wwPDB
Read more: www.wwpdb.org/news/news?ye...
Read more: www.wwpdb.org/news/news?ye...
@jmolbiol.bsky.social at the start of the new year, introducing a complex centric view of experimentally determined macromolecular assemblies in the PDB.
📄 Read the paper: sciencedirect.com/science/arti...
#PDBeKB #MacromolecularComplex #Bioinformatics
@jmolbiol.bsky.social at the start of the new year, introducing a complex centric view of experimentally determined macromolecular assemblies in the PDB.
📄 Read the paper: sciencedirect.com/science/arti...
#PDBeKB #MacromolecularComplex #Bioinformatics
The PDBe wishes you a very Merry Christmas and a Happy New Year. We are delighted to share our jointly designed EMDB/PDBe Christmas card with you. It has been a busy year, and we look forward to seeing you in the New Year.
The PDBe wishes you a very Merry Christmas and a Happy New Year. We are delighted to share our jointly designed EMDB/PDBe Christmas card with you. It has been a busy year, and we look forward to seeing you in the New Year.
This reflects advances in cryo-EM, high-throughput crystallography, and AI-driven modelling, supported by expert wwPDB biocuration and open data sharing.
Read more: wwpdb.org/news/news?ye...
This reflects advances in cryo-EM, high-throughput crystallography, and AI-driven modelling, supported by expert wwPDB biocuration and open data sharing.
Read more: wwpdb.org/news/news?ye...
The new PDBe-KB Ligand pages are live with a cleaner layout, intuitive tabs, and a brand-new onboarding tour to help you get started.
Explore here 👉 pdbe.org/chem/STI
The new PDBe-KB Ligand pages are live with a cleaner layout, intuitive tabs, and a brand-new onboarding tour to help you get started.
Explore here 👉 pdbe.org/chem/STI
The release aligns AFDB with UniProt 2025_03 and introduces a redesigned entry page with integrated annotations, domains, summaries, and a 3D viewer.
📄 Read more: academic.oup.com/nar/advance-...
The release aligns AFDB with UniProt 2025_03 and introduces a redesigned entry page with integrated annotations, domains, summaries, and a 3D viewer.
📄 Read more: academic.oup.com/nar/advance-...
Our latest PDBe entry page update adds smoother browsing, better 3D selections, and direct links to page sections.
Examples:
Macromolecule:
www.ebi.ac.uk/pdbe/entry/p...
Ligand:
www.ebi.ac.uk/pdbe/entry/p...
Complex:
www.ebi.ac.uk/pdbe/entry/p...
Our latest PDBe entry page update adds smoother browsing, better 3D selections, and direct links to page sections.
Examples:
Macromolecule:
www.ebi.ac.uk/pdbe/entry/p...
Ligand:
www.ebi.ac.uk/pdbe/entry/p...
Complex:
www.ebi.ac.uk/pdbe/entry/p...
Starting Jan 2026, data depositions will be redistributed:
• PDBj → Oceania + most of Asia (except China)
• PDBc → China
• RCSB PDB → Americas
• PDBe → Europe & Africa
Starting Jan 2026, data depositions will be redistributed:
• PDBj → Oceania + most of Asia (except China)
• PDBc → China
• RCSB PDB → Americas
• PDBe → Europe & Africa
🔗 Explore (SARS-CoV-2 spike, PDB 9CXE): ebi.ac.uk/pdbe/pdbe-kb...
📄 Read the preprint: ssrn.com/abstract=568...
#PDBeKB #MacromolecularComplexes #StructuralBiology
🔗 Explore (SARS-CoV-2 spike, PDB 9CXE): ebi.ac.uk/pdbe/pdbe-kb...
📄 Read the preprint: ssrn.com/abstract=568...
#PDBeKB #MacromolecularComplexes #StructuralBiology
To ensure FAIR data practices, wwPDB is remediating existing polyatomic metal-containing entries and CCDs — improving their chemical and coordination descriptions for better findability and reuse.
To ensure FAIR data practices, wwPDB is remediating existing polyatomic metal-containing entries and CCDs — improving their chemical and coordination descriptions for better findability and reuse.
Old: alphafold.com/entry/P40763
New: alphafold.com/entry/AF-P40...
Simply add 'AF-' and '-F1' to the UniProt ID. Update your bookmarks and code!
Old: alphafold.com/entry/P40763
New: alphafold.com/entry/AF-P40...
Simply add 'AF-' and '-F1' to the UniProt ID. Update your bookmarks and code!
Totals v4 → v6: 241,070,489 entries.
Since v4: +65,711,653 added, 39,324,993 removed, 276,539 changed (in sequence), 175,082,297 unchanged (metadata refresh, relabelled v6). Details 👇
Totals v4 → v6: 241,070,489 entries.
Since v4: +65,711,653 added, 39,324,993 removed, 276,539 changed (in sequence), 175,082,297 unchanged (metadata refresh, relabelled v6). Details 👇
Find out more, register, submit your abstract ➡️ mddbr.eu/conference/
#MDDB #OpenScience #FAIRdata
📅 February 3-5, 2026
📍 Lausanne, Switzerland
Join us for an inspiring event with outstanding speakers and experts in the field!
Read more and register here ➡️ mddbr.eu/conference/
#MDDB #OpenScience #FAIRdata
Find out more, register, submit your abstract ➡️ mddbr.eu/conference/
#MDDB #OpenScience #FAIRdata
We'll keep developing the AlphaFold Database to support protein science worldwide 🎉
To mark the moment we’ve synchronised the database with UniProtKB release 2025_03.
www.ebi.ac.uk/about/news/t...
🖥️🧬 #AlphaFold
@pdbeurope.bsky.social
We'll keep developing the AlphaFold Database to support protein science worldwide 🎉
To mark the moment we’ve synchronised the database with UniProtKB release 2025_03.
www.ebi.ac.uk/about/news/t...
🖥️🧬 #AlphaFold
@pdbeurope.bsky.social
For more information, read the news item: www.ebi.ac.uk/pdbe/news/br...
For more information, read the news item: www.ebi.ac.uk/pdbe/news/br...
From Oct 1, all new 3DEM entries will include the Q-score percentile slider — helping users quickly assess model–map fit quality across EMDB/PDB archives.
Read more: www.wwpdb.org/news/news?ye...
From Oct 1, all new 3DEM entries will include the Q-score percentile slider — helping users quickly assess model–map fit quality across EMDB/PDB archives.
Read more: www.wwpdb.org/news/news?ye...
The new PDBe entry pages make it easier to explore protein structures.
🟢 Visualise ligands & macromolecules with improved 3D viewers
🟢 Get background info from AI-based annotations
🟢 Add your own annotations to viewers without leaving the browser
@pdbeurope.bsky.social
🧬🖥️
The new PDBe entry pages make it easier to explore protein structures.
🟢 Visualise ligands & macromolecules with improved 3D viewers
🟢 Get background info from AI-based annotations
🟢 Add your own annotations to viewers without leaving the browser
@pdbeurope.bsky.social
🧬🖥️
✨ Discover the new interactive, personalised & mobile-ready PDBe Entry Pages.
📖 Read more: www.ebi.ac.uk/about/news/u...
🔍 Try it: www.ebi.ac.uk/pdbe/entry/p...
✨ Discover the new interactive, personalised & mobile-ready PDBe Entry Pages.
📖 Read more: www.ebi.ac.uk/about/news/u...
🔍 Try it: www.ebi.ac.uk/pdbe/entry/p...