Stephen Turner
@stephenturner.us
Associate Professor of Data Science & asst. Dean of Research at UVA School of Data Science, #Rstats enthusiast, dad, runner, guitar noise-maker. Views my own.
Web: https://stephenturner.us/
Newsletter: https://blog.stephenturner.us
Web: https://stephenturner.us/
Newsletter: https://blog.stephenturner.us
Eduomics: a Nextflow pipeline to simulate -omics data for education www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/lescai-teach...
December 1, 2025 at 7:02 PM
Eduomics: a Nextflow pipeline to simulate -omics data for education www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/lescai-teach...
LorMe: a streamlined and interoperable R framework for end-to-end microbiome analysis www.biorxiv.org/content/10.1... #Rstats 🧬🖥️🧪 github.com/wangnq111/Lo...
December 1, 2025 at 3:00 PM
LorMe: a streamlined and interoperable R framework for end-to-end microbiome analysis www.biorxiv.org/content/10.1... #Rstats 🧬🖥️🧪 github.com/wangnq111/Lo...
Papers from the NeurIPS 2025 Workshop on #Biosecurity Safeguards for Generative AI: doi.org/10.59350/ep7... 🧬🖥️🧪
December 1, 2025 at 1:34 PM
Papers from the NeurIPS 2025 Workshop on #Biosecurity Safeguards for Generative AI: doi.org/10.59350/ep7... 🧬🖥️🧪
RegEvol: detection of directional selection in regulatory sequences through phenotypic predictions and phenotype-to-fitness functions www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/mrrlab/RegEvol
November 30, 2025 at 5:00 PM
RegEvol: detection of directional selection in regulatory sequences through phenotypic predictions and phenotype-to-fitness functions www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/mrrlab/RegEvol
Ovo, an Open-Source Ecosystem for De Novo Protein Design www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/MSDLLCpapers...
November 29, 2025 at 5:00 PM
Ovo, an Open-Source Ecosystem for De Novo Protein Design www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/MSDLLCpapers...
Jerry is annoyed about Xmas decor coming out before December
November 28, 2025 at 10:26 PM
Jerry is annoyed about Xmas decor coming out before December
Reliable Identification of Homodimers Using AlphaFold www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/SarahND97/al...
November 28, 2025 at 7:00 PM
Reliable Identification of Homodimers Using AlphaFold www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/SarahND97/al...
Mapping spatial gradients in spatial transcriptomics data with score matching www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/chitra-lab/S...
November 28, 2025 at 5:00 PM
Mapping spatial gradients in spatial transcriptomics data with score matching www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/chitra-lab/S...
plinkQC: An Integrated Tool for Ancestry Inference, Sample Selection, and Quality Control in Population Genetics www.biorxiv.org/content/10.1... 🧬🖥️🧪 R package meyer-lab-cshl.github.io/plinkQC/ #Rstats
November 28, 2025 at 3:01 PM
plinkQC: An Integrated Tool for Ancestry Inference, Sample Selection, and Quality Control in Population Genetics www.biorxiv.org/content/10.1... 🧬🖥️🧪 R package meyer-lab-cshl.github.io/plinkQC/ #Rstats
November 27, 2025 at 8:03 PM
Optimized k-mer search across millions of bacterial genomes on laptops www.biorxiv.org/content/10.1... 🧬🖥️🧪
November 27, 2025 at 7:03 PM
Optimized k-mer search across millions of bacterial genomes on laptops www.biorxiv.org/content/10.1... 🧬🖥️🧪
Comparative metagenomics using pan-metagenomics graphs www.biorxiv.org/content/10.1... 🧬🖥️🧪
November 27, 2025 at 5:01 PM
Comparative metagenomics using pan-metagenomics graphs www.biorxiv.org/content/10.1... 🧬🖥️🧪
Pregame backyard hike zen
November 27, 2025 at 4:03 PM
Pregame backyard hike zen
10,239 whole genomes with multi-omic and clinical health information as the Korean population multi-omic reference dataset www.biorxiv.org/content/10.1... 🧬🖥️🧪
November 27, 2025 at 3:00 PM
10,239 whole genomes with multi-omic and clinical health information as the Korean population multi-omic reference dataset www.biorxiv.org/content/10.1... 🧬🖥️🧪
Genome region aware CADD thresholds for noncoding variant prioritization academic.oup.com/nargab/artic... 🧬🖥️🧪
November 26, 2025 at 7:01 PM
Genome region aware CADD thresholds for noncoding variant prioritization academic.oup.com/nargab/artic... 🧬🖥️🧪
Transforming Biological Foundation Model Representations for Out-of-Distribution Data www.biorxiv.org/content/10.1... 🧬🖥️🧪
November 26, 2025 at 5:03 PM
Transforming Biological Foundation Model Representations for Out-of-Distribution Data www.biorxiv.org/content/10.1... 🧬🖥️🧪
AI-Generated “Slop” in Online Biomedical Science Educational Videos: Mixed Methods Study of Prevalence, Characteristics, and Hazards to Learners and Teachers pmc.ncbi.nlm.nih.gov/articles/PMC... 🧬🖥️🧪
November 26, 2025 at 3:02 PM
AI-Generated “Slop” in Online Biomedical Science Educational Videos: Mixed Methods Study of Prevalence, Characteristics, and Hazards to Learners and Teachers pmc.ncbi.nlm.nih.gov/articles/PMC... 🧬🖥️🧪
$96 for 4 movie tickets is wicked
November 26, 2025 at 10:45 AM
$96 for 4 movie tickets is wicked
The Era of Agentic Organization: Learning to Organize with Language Models arxiv.org/abs/2510.26658
November 25, 2025 at 7:02 PM
The Era of Agentic Organization: Learning to Organize with Language Models arxiv.org/abs/2510.26658
Data-driven strategies for drug repurposing: insights, recommendations, and case studies academic.oup.com/bib/article/... 🧬🖥️🧪
November 25, 2025 at 3:00 PM
Data-driven strategies for drug repurposing: insights, recommendations, and case studies academic.oup.com/bib/article/... 🧬🖥️🧪
Shutdown fallout: >370 study sections, >24,000 apps were bumped. To keep Jan+May 2026 councils on track, most panels will now only discuss ~30-35% of applications, add a new “competitive but not discussed” tier, and use shorter bullet-style summaries. grants.nih.gov/grants/guide...
November 25, 2025 at 11:52 AM
Shutdown fallout: >370 study sections, >24,000 apps were bumped. To keep Jan+May 2026 councils on track, most panels will now only discuss ~30-35% of applications, add a new “competitive but not discussed” tier, and use shorter bullet-style summaries. grants.nih.gov/grants/guide...
Generating long deletions across the genome with pooled paired prime editing screens www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/julianewelle...
November 25, 2025 at 9:54 AM
Generating long deletions across the genome with pooled paired prime editing screens www.biorxiv.org/content/10.1... 🧬🖥️🧪 github.com/julianewelle...
Claude Opus 4.5 System Card (PDF) assets.anthropic.com/m/64823ba748... bioinformatics, virology uplift, CBRN safety analysis
November 25, 2025 at 9:46 AM
Claude Opus 4.5 System Card (PDF) assets.anthropic.com/m/64823ba748... bioinformatics, virology uplift, CBRN safety analysis
Proteome-wide model for human disease genetics www.nature.com/articles/s41... (read free: rdcu.be/eRvLm) 🧬🖥️🧪 github.com/debbiemarksl...
November 24, 2025 at 8:40 PM
Proteome-wide model for human disease genetics www.nature.com/articles/s41... (read free: rdcu.be/eRvLm) 🧬🖥️🧪 github.com/debbiemarksl...
To be or not to be a protein coding mutation, that’s the question! academic.oup.com/nargab/artic... 🧬🖥️🧪
November 24, 2025 at 7:00 PM
To be or not to be a protein coding mutation, that’s the question! academic.oup.com/nargab/artic... 🧬🖥️🧪