Sebastian Lequime 🟥
lequimelab.eu
Sebastian Lequime 🟥
@lequimelab.eu
Assistant prof @rug.nl | virus ecology and evolution | arboviruses | arthropods | epidemiology

🇫🇷 in 🇳🇱

Data editor at the Journal of Evolutionary Biology

https://lequimelab.eu/
If you already have a C. maenas nimavirus sequence, I could try to extract relevant reads it if you want a Dutch sequence.
May 20, 2025 at 11:32 AM
Most of the viral reads were retroviruses (likely retrotransposons). Some of the contigs corresponding to viruses have a taxonomic assignment to Nimavirus indeed, somewhat related to Hemigrapsus takanoi nimavirus.
May 20, 2025 at 11:31 AM
I meant no negative effect (sorry)
January 25, 2025 at 6:36 AM
Except if I completely missed that discussion it in the manuscript, but there is likely a major (and probably massive) reporting bias in the literature against negative results (ie no negative results) for virus-insect interactions outcome.
January 25, 2025 at 6:33 AM
Improved availability/accessibility could help us improve that, such as correcting the databases and continuing to build up our knowledge on EVEs.
December 19, 2024 at 1:09 PM
Hence, it is also good for the taxonomy of viruses! How many EVEs are hidden in NCBI, posing as exogenous viral sequences from meta(transcriptomic/genomic) studies? Some even might have a binomial name! (😛)
December 19, 2024 at 1:09 PM
Also to help virus discovery projects and avoid misclassification of endogenous elements as exogenous viruses, as we have previously discussed doi.org/10.1093/ve/v...
A tale of caution: How endogenous viral elements affect virus discovery in transcriptomic data
Abstract. Large-scale metagenomic and -transcriptomic studies have revolutionized our understanding of viral diversity and abundance. In contrast, endogeno
doi.org
December 19, 2024 at 1:09 PM