Jane Fudyma
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jane-fudyma.bsky.social
Jane Fudyma
@jane-fudyma.bsky.social
PhD candidate at UC Davis in Joanne Emerson’s lab and the Soils and Biogeochemistry grad group. Soil multi-omics, viruses and microbes, biogeochemical cycling. ARCS Foundation scholar.
Reposted by Jane Fudyma
Potential PhD opportunity studying soil virus ecology in our group. Please get in touch if interested!
📣 PhD Scholarship Funding Opportunity!

Interested in pursuing a PhD in soil virus ecology and biogeochemical cycling? 🦠

Have a Masters degree from abroad and ranked in the top 20% of your class? 🎓

Get in touch now! See our website for further details. Submission deadline in August.
April 22, 2025 at 6:24 PM
Reposted by Jane Fudyma
SBG students and faculty brought soil science to life last weekend at the 111th UC Davis Picnic Day! 🌱 Visitors explored Soil Science Central by painting with soil, learning texture-by-feel, and spotting live nematodes under the microscope. We love sharing our passion for soil with the community! 🤎
April 18, 2025 at 1:34 AM
Reposted by Jane Fudyma
The UCD Soils Judging Team is heading to Nationals!
Please consider joining Emeriti Michael Singer and Randy Southard in supporting our team at the National Championships in Wisconsin! Donations will support travel expenses so our students can proudly represent UCD on the national stage. Go Aggies!
April 12, 2025 at 3:15 AM
Our account moved over from Twitter - give us a follow!
Hello BlueSky! This is the official account for the Soils and Biogeochemistry Graduate Group at the UC Davis. We are excited to join and contribute to the BlueSky community of scholars!

Find out more about the graduate group by visiting our website (soils.ucdavis.edu) or X account (@SBGUCDavis)
Home :: Soils and Biogeochemistry Graduate Group
soils.ucdavis.edu
January 29, 2025 at 3:20 PM
Reposted by Jane Fudyma
Major, major congratulations to my colleague Joanne Emerson for receiving the PECASE! This prestigious award is recognition of amazing early career faculty who developed the most compelling and innovative NSF CAREER grants!

Joanne's lab pioneers the field of soil viral community ecology 🤩 🧪🧫
January 17, 2025 at 1:53 AM
Reposted by Jane Fudyma
Wetting dry soil rapidly stimulates microbial activity and has important consequences for biogeochemical cycling. In our paper out today, we show that part of that response can be explained by how bacterial genomes are written (i.e. codon usage, nucleotide freq., genome size)
doi.org/10.1073/pnas...
PNAS
Proceedings of the National Academy of Sciences (PNAS), a peer reviewed journal of the National Academy of Sciences (NAS) - an authoritative source of high-impact, original research that broadly spans...
doi.org
January 13, 2025 at 9:07 PM
Reposted by Jane Fudyma
📣 All our sessions about advancing soil carbon predictions is today!
I’m at #AGU24 all week! 📋Come to my poster on Wed morning to chat about integrating microbial diversity and adaptation into ecosystem models. 🗣️Come to our 2 oral sessions Wed afternoon to talk about improving soil carbon predictions. ☕️And message me to chat over coffee!
December 11, 2024 at 11:05 AM
Reposted by Jane Fudyma
If you signed up for the Soil Carbon Research starter pack and are heading to #AGU2024, don’t miss our session on integrating microbial complexity to advance soil carbon predictions! 🦠🌍 Featuring invited speakers: Christina Kaiser, Jackie Weissman, Katie Rocci, and Will Wieder 🤩.
December 6, 2024 at 6:28 PM
Reposted by Jane Fudyma
If you’re at #AGU24 next week and interested in enhanced rock weathering, let’s chat at my Monday morning poster! I’ll be sharing some lessons learned from our field trials over the last 5 years and exciting new work going on in California.
December 6, 2024 at 7:39 PM
Are you attending #AGU24 & curious about soil viruses? Bring your coffee & come chat w/me at my poster Weds morning titled “Resolving viral contributions to soil ecosystem functioning: a spatially designed multi-omic approach” Session B31I, Poster 1387. Pretty field pics below!
December 6, 2024 at 4:57 PM
Reposted by Jane Fudyma
Working on phage research?

Dr. Catherine Hernandez and I are co-convening the "Phage Ecology: From Prophage Decision Making to Ecosystem Modulation" in-depth symposium at ASM Microbe 2025 and we want YOU to be part of it!

Abstract submission is now open!
More info below

🧪🦠🔬
#Phagesky
#Microsky
November 22, 2024 at 11:07 PM
Reposted by Jane Fudyma
Faculty mentoring in academic institutions, a thread.
As I advance in my academic career (read: as I keep getting more gray hair), I've come to appreciate, even more than before, the profound responsibility we (senior-ish faculty) have to support and nurture emerging talent, not diminish it.
November 21, 2024 at 12:12 AM
Reposted by Jane Fudyma
PSA: All #rstats package on #cran will get an official DOI!

This will facilitate bibliometrics and giving credit to R package authors.

Registering all 20,000+ packages will still take a few more days. But the first couple of thousand are already live. Example:
June 11, 2024 at 8:32 AM
Reposted by Jane Fudyma
We finally put it together! The first ICTV #Virus #Taxonomy Challenge provides a dataset of thousands of contigs from diverse viruses, asking bioinformaticians to classify them in an automated, reproducible way. See: ictv-vbeg.github.io/ICTV-Taxonom... - tell your bioinformaticians and colleagues!
Why do we need a computational taxonomy?
A community challenge to evaluate and compare viral genome taxonomy classifiers
ictv-vbeg.github.io
June 20, 2024 at 7:08 AM