Genetics ML Papers
@geneticsmlpapers.bsky.social
Genomic and phenotypic delimitation of species in a temperate aquatic biodiversity hotspot https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syaf083/8346017
December 1, 2025 at 2:02 PM
Genomic and phenotypic delimitation of species in a temperate aquatic biodiversity hotspot https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syaf083/8346017
Accurate and Efficient Phylogenetic Inference through End-To-End Deep Learning https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf260/8300277
December 1, 2025 at 1:57 PM
Accurate and Efficient Phylogenetic Inference through End-To-End Deep Learning https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf260/8300277
RNA degradation modulates unique aging-related gene expression in naked mole-rats
https://www.biorxiv.org/content/10.1101/2025.11.28.691058v1
December 1, 2025 at 1:52 PM
RNA degradation modulates unique aging-related gene expression in naked mole-rats
https://www.biorxiv.org/content/10.1101/2025.11.28.691058v1
D-BLUP: a differentiable genomic BLUP model with learnable variance and marker weights
https://www.biorxiv.org/content/10.1101/2025.11.25.690542v1
December 1, 2025 at 1:47 PM
D-BLUP: a differentiable genomic BLUP model with learnable variance and marker weights
https://www.biorxiv.org/content/10.1101/2025.11.25.690542v1
PRSNet-2: End-to-end genotype-to-phenotype prediction via hierarchical graph neural networks
https://www.biorxiv.org/content/10.1101/2025.11.22.689899v1
December 1, 2025 at 1:42 PM
PRSNet-2: End-to-end genotype-to-phenotype prediction via hierarchical graph neural networks
https://www.biorxiv.org/content/10.1101/2025.11.22.689899v1
The Macroevolution of Filamentation Morphology Across the Saccharomycotina Yeast Subphylum
https://www.biorxiv.org/content/10.1101/2025.11.26.690719v1
December 1, 2025 at 1:37 PM
The Macroevolution of Filamentation Morphology Across the Saccharomycotina Yeast Subphylum
https://www.biorxiv.org/content/10.1101/2025.11.26.690719v1
RegEvol: detection of directional selection in regulatory sequences through phenotypic predictions and phenotype-to-fitness functions
https://www.biorxiv.org/content/10.1101/2025.11.26.690685v1
December 1, 2025 at 1:32 PM
RegEvol: detection of directional selection in regulatory sequences through phenotypic predictions and phenotype-to-fitness functions
https://www.biorxiv.org/content/10.1101/2025.11.26.690685v1
Splendid isolation with migration: Diversity dynamics of South American mammals
https://www.biorxiv.org/content/10.1101/2025.11.28.691169v1
December 1, 2025 at 1:27 PM
Splendid isolation with migration: Diversity dynamics of South American mammals
https://www.biorxiv.org/content/10.1101/2025.11.28.691169v1
GRNITE: Gene Regulatory Network Inference with Text Embeddings
https://www.biorxiv.org/content/10.1101/2025.11.25.690454v1
December 1, 2025 at 1:22 PM
GRNITE: Gene Regulatory Network Inference with Text Embeddings
https://www.biorxiv.org/content/10.1101/2025.11.25.690454v1
Fine-Tuning Protein Language Models Enhances the Identification and Interpretation of the Transcription Factors
https://www.biorxiv.org/content/10.1101/2025.11.27.691010v1
December 1, 2025 at 1:17 PM
Fine-Tuning Protein Language Models Enhances the Identification and Interpretation of the Transcription Factors
https://www.biorxiv.org/content/10.1101/2025.11.27.691010v1
Towards improved particle averaging for single-molecule localization microscopy using geometric deep learning
https://www.biorxiv.org/content/10.1101/2025.11.26.690737v1
December 1, 2025 at 1:12 PM
Towards improved particle averaging for single-molecule localization microscopy using geometric deep learning
https://www.biorxiv.org/content/10.1101/2025.11.26.690737v1
PhyloCNN: Improving tree representation and neural network architecture for deep learning from trees in phylodynamics and diversification studies https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syaf082/8340354
November 24, 2025 at 2:06 PM
PhyloCNN: Improving tree representation and neural network architecture for deep learning from trees in phylodynamics and diversification studies https://academic.oup.com/sysbio/advance-article/doi/10.1093/sysbio/syaf082/8340354
Accurate and Efficient Phylogenetic Inference through End-To-End Deep Learning https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf260/8300277
November 24, 2025 at 2:01 PM
Accurate and Efficient Phylogenetic Inference through End-To-End Deep Learning https://academic.oup.com/mbe/article/doi/10.1093/molbev/msaf260/8300277
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies https://journals.plos.org/plosgenetics/article
November 24, 2025 at 1:56 PM
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies https://journals.plos.org/plosgenetics/article
OPUS-ET: Resolving Compositional and Conformational Heterogeneities of Biomolecules in Cryo-Electron Tomography
https://www.biorxiv.org/content/10.1101/2025.11.21.688990v1
November 24, 2025 at 1:51 PM
OPUS-ET: Resolving Compositional and Conformational Heterogeneities of Biomolecules in Cryo-Electron Tomography
https://www.biorxiv.org/content/10.1101/2025.11.21.688990v1
A deep learning framework for building INDEL mutation rate maps
https://www.biorxiv.org/content/10.1101/2025.11.18.689146v1
November 24, 2025 at 1:46 PM
A deep learning framework for building INDEL mutation rate maps
https://www.biorxiv.org/content/10.1101/2025.11.18.689146v1
Dissecting sequence determinants of DNA methylation and in silico perturbation
https://www.biorxiv.org/content/10.1101/2025.11.20.689274v1
November 24, 2025 at 1:41 PM
Dissecting sequence determinants of DNA methylation and in silico perturbation
https://www.biorxiv.org/content/10.1101/2025.11.20.689274v1
Ancestral Sequences Cannot be Accurately Reconstructed via Interpolation in a Variational Autoencoder's Latent Space
https://www.biorxiv.org/content/10.1101/2025.11.19.689264v1
November 24, 2025 at 1:36 PM
Ancestral Sequences Cannot be Accurately Reconstructed via Interpolation in a Variational Autoencoder's Latent Space
https://www.biorxiv.org/content/10.1101/2025.11.19.689264v1
The Human-In-the-Loop Drug Design Framework with Equivariant Rectified Flow
https://www.biorxiv.org/content/10.1101/2025.11.20.689585v1
November 24, 2025 at 1:31 PM
The Human-In-the-Loop Drug Design Framework with Equivariant Rectified Flow
https://www.biorxiv.org/content/10.1101/2025.11.20.689585v1
Quantum and Classical Graph Convolutional Neural Networks for Protein Ligand Dissociation Constant Prediction
https://www.biorxiv.org/content/10.1101/2025.11.20.689635v1
November 24, 2025 at 1:26 PM
Quantum and Classical Graph Convolutional Neural Networks for Protein Ligand Dissociation Constant Prediction
https://www.biorxiv.org/content/10.1101/2025.11.20.689635v1
CCK* (Convex Closure K*): A Suite of Algorithms for the De Novo Design of L- and D-peptide Binders
https://www.biorxiv.org/content/10.1101/2025.11.21.689740v1
November 24, 2025 at 1:20 PM
CCK* (Convex Closure K*): A Suite of Algorithms for the De Novo Design of L- and D-peptide Binders
https://www.biorxiv.org/content/10.1101/2025.11.21.689740v1
Mapping the AI Life Sciences Landscape in Greece: A National Survey and Bibliometric Comparison with Global Trends
https://www.biorxiv.org/content/10.1101/2025.11.19.689212v1
November 24, 2025 at 1:15 PM
Mapping the AI Life Sciences Landscape in Greece: A National Survey and Bibliometric Comparison with Global Trends
https://www.biorxiv.org/content/10.1101/2025.11.19.689212v1
Genomic Prediction of Feed Efficiency in Boars by Deep Learning https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkaf274/8323593
November 17, 2025 at 2:24 PM
Genomic Prediction of Feed Efficiency in Boars by Deep Learning https://academic.oup.com/g3journal/advance-article/doi/10.1093/g3journal/jkaf274/8323593
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies https://journals.plos.org/plosgenetics/article
November 17, 2025 at 2:19 PM
Modelling transcription with explainable AI uncovers context-specific epigenetic gene regulation at promoters and gene bodies https://journals.plos.org/plosgenetics/article
Pervasive binding of the stem cell transcription factor SALL4 shapes the chromatin landscape
https://www.biorxiv.org/content/10.1101/2025.11.14.688441v1
November 17, 2025 at 2:14 PM
Pervasive binding of the stem cell transcription factor SALL4 shapes the chromatin landscape
https://www.biorxiv.org/content/10.1101/2025.11.14.688441v1