🌍 Excited to be present at #EUSIPCO2025 in Palermo!
📄 Deep Multitask Learning for Automated Tissue Segmentation & Cell Detection
👤 Presenter: Mohamed Mounib BENIMAM
📅 September 2025
📍 Palermo, Italy
Let’s connect around cutting-edge image processing!
#SignalProcessing #MedicalImaging #DeepLearning

📌 Tracking cell dynamics just got smarter!
We use Bayesian linking algorithms — KOFT and SKT — implemented in our ByoTrack 🐍 Python library.
Kalman filters + optical flow for links & mitosis detection.
[PDF] celltrackingchallenge.net
#CellTracking #Python #KalmanFilter #OpticalFlow #OpenScience

🚀 Manual mask annotation slowing you down?
💡 SAMJ is a new ImageJ/Fiji plugin using Segment Anything (SAM) for fast, interactive segmentation — no GPU needed, one-click install, real-time results.
🔬 Perfect for large biomedical images.
arxiv.org/abs/2506.02783
#AI #Bioimaging #ImageJ #OpenSource

🚨Paper alert!
🚀 We presented SINETRA at #ISBI2025 in Houston
A new simulator for generating realistic 2D/3D neuron tracking data in moving animals like Hydra vulgaris
🧠 Helps test and improve tracking algorithms under tough conditions
📄 dx.doi.org/10.1109/ISBI...
#celltracking #syntheticdata #ISBI

Exciting news! 🎉 We propose Spatiopath, a null-hypothesis framework for cell-cell & cell-tumor interactions that distinguishes statistically significant immune cell associations from random ones.📊🔬
Check it out:😊 www.nature.com/articles/s41...
#statistics #immunology #oncology

👉To classify the dynamic behaviors governing biological particles, we developed a neural network model based on geometric trajectory descriptors and a framework to robustly detect dynamic changes in compound trajectories.
#simulation #activationpathwayofreceptorsCCR5
👉 hal.science/hal-04870375v1

The stiffness of cells and their nuclei is a biomarker of several pathologies, yet is usually reduced to a single value. In our last paper, we propose a method to estimate heterogeneous maps of stiffness inside freely moving cells using only fluorescence imaging.
ieeexplore.ieee.org/document/107...

Hanson A, Reme R, Telerman N, Yamamoto W, Olivo-Marin JC, Lagache T, & Yuste R.
Automatic monitoring of whole-body neural activity in behaving Hydra. bioRxiv, 2023-09.
An open-source platform to monitor neurons’activity in behaving Hydra.
#Hydra #Byotrack #TraseIn #Python #Icy